Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq2722364 113 3e-20 >seq2722364 Length=204 Score = 113 bits (124), Expect = 3e-20 Identities = 133/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 50789 TCAA-CCATTTAGCGACTTCCGACCAATCCCAGAGTGGAGACTGACCGCTGATGCGCTGT 50847 |||| ||||| || || || | |||||||||||| || ||||| ||| | || || ||| Sbjct 24 TCAAGCCATTCGGCTACCTCAGCCCAATCCCAGAGCGGTGACTGGCCGGTAATCCGTTGT 83 Query 50848 ACAGGGCAAGGGAAATCGCCTTTGCCACGTAAGCCGTCTTTAAGCAGAGTGATAGCCTGG 50907 | ||| || ||||| ||||| ||||| | ||| ||||| |||| |||||||||||| Sbjct 84 ATTGGGTTTGGAAAATCACCTTTCCCACGGATGCCATCTTTCAGCATGGTGATAGCCTGG 143 Query 50908 CGGGTTAAGCCGGAGAGTTGAGCGATATCACTCAAACCTACCAGTGCTGAATCTACCGA 50966 || | ||| | || || | ||| || || |||| || ||||||| ||||| || || Sbjct 144 CGAGATAAAGCAGAAAGCTCAGCTATGTCGCTCAGCCCGACCAGTGTGGAATCAACAGA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317994133811460