Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019400.1 Length=147940 Score E Sequences producing significant alignments: (Bits) Value seq3046662 95.1 1e-14 >seq3046662 Length=1096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 50037 GCCATAGCGTTGATCGTCAGGTCACGACGAGACAGATCCTCCACCAGTGTCACATCGGGG 50096 ||||| |||||||| ||||||||||| ||| ||| ||||| |||| ||||| |||||| Sbjct 336 GCCATGGCGTTGATGGTCAGGTCACGGCGAATCAGGTCCTCTTCCAGCGTCACCTCGGGG 277 Query 50097 CTGAAGAATGTCTCGAAGTCAGTATGACCGTTACCAGTCTTACGCTCAGTACGGGCGAGA 50156 ||| | | | ||| | | ||| ||| |||| || || || |||||||| Sbjct 276 CTGGCGTGAAACACAAAGCCGCCGTAACCCCGACCGCTCTTGCGTTCGGTGCGGGCGAGG 217 Query 50157 GCATACTCTTCGTTGGTTTCAGGATGCAGGTATACTGGAAAAGCAGCGCCAACCTGGGTG 50216 || || || ||| | | | || | |||| |||| || || ||||||| || | || Sbjct 216 GCGTATTCGTCGCCGTTCTTGGGGTCCAGGAATACCGGGAAGTCAGCGCCGACTGGCTTG 157 Query 50217 AAACCTTTATTGATCATTTCTTC-GTGCGTTGCACCCACAACCACGTAGTCACGGTC-AT 50274 | ||||| || ||||| ||| ||| || ||||| || || ||| ||| || | Sbjct 156 TAGCCTTTGGCGAGCATTTGTTCAGTG-GTCGCACCGACCACAACGCGGTCGATATCGGT 98 Query 50275 GAACTTCACGACCAAGCAAACCATCACGCACAGCGCCACCTAC 50317 || ||| | | || |||| | ||||||||| || || || || Sbjct 97 GACCTTGA-GGCCGAGCAGGCGATCACGCACCGCACCGCCGAC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455008368924000