Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq890784 98.7 2e-15 seq868348 98.7 2e-15 seq2533492 93.3 9e-14 seq1675796 87.8 4e-12 seq1675795 87.8 4e-12 >seq890784 Length=111 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||| ||||||||| |||||||||| |||||||||||| || ||| ||||||||||| | Sbjct 110 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGACAACGGTTCGATC 51 Query 324575 CCGTTTAGCTCCAC 324588 |||||| ||||||| Sbjct 50 CCGTTTGGCTCCAC 37 >seq868348 Length=111 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||| ||||||||| |||||||||| |||||||||||| || ||| ||||||||||| | Sbjct 110 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGGCAACGGTTCGATC 51 Query 324575 CCGTTTAGCTCCAC 324588 |||||| ||||||| Sbjct 50 CCGTTTGGCTCCAC 37 >seq2533492 Length=171 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571 |||||||| ||||||||| |||||||||| |||||||||||| || |||||||||||||| Sbjct 66 TATGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCG 7 Query 324572 AACCCG 324577 | |||| Sbjct 6 ATCCCG 1 >seq1675796 Length=127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 324524 GCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAACCCGTTTAGC 324583 |||||| |||||||||| |||||||||||| || ||||||||||||||| ||||||| || Sbjct 1 GCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGATCCCGTTTGGC 60 Query 324584 TCC 324586 ||| Sbjct 61 TCC 63 >seq1675795 Length=127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 324524 GCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAACCCGTTTAGC 324583 |||||| |||||||||| |||||||||||| || ||||||||||||||| ||||||| || Sbjct 1 GCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGATCCCGTTTGGC 60 Query 324584 TCC 324586 ||| Sbjct 61 TCC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102178472334478