Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq890784 98.7 2e-15
seq868348 98.7 2e-15
seq2533492 93.3 9e-14
seq1675796 87.8 4e-12
seq1675795 87.8 4e-12
>seq890784
Length=111
Score = 98.7 bits (108), Expect = 2e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574
||||| ||||||||| |||||||||| |||||||||||| || ||| ||||||||||| |
Sbjct 110 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGACAACGGTTCGATC 51
Query 324575 CCGTTTAGCTCCAC 324588
|||||| |||||||
Sbjct 50 CCGTTTGGCTCCAC 37
>seq868348
Length=111
Score = 98.7 bits (108), Expect = 2e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574
||||| ||||||||| |||||||||| |||||||||||| || ||| ||||||||||| |
Sbjct 110 GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGGCAACGGTTCGATC 51
Query 324575 CCGTTTAGCTCCAC 324588
|||||| |||||||
Sbjct 50 CCGTTTGGCTCCAC 37
>seq2533492
Length=171
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571
|||||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||||
Sbjct 66 TATGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCG 7
Query 324572 AACCCG 324577
| ||||
Sbjct 6 ATCCCG 1
>seq1675796
Length=127
Score = 87.8 bits (96), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 324524 GCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAACCCGTTTAGC 324583
|||||| |||||||||| |||||||||||| || ||||||||||||||| ||||||| ||
Sbjct 1 GCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGATCCCGTTTGGC 60
Query 324584 TCC 324586
|||
Sbjct 61 TCC 63
>seq1675795
Length=127
Score = 87.8 bits (96), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 324524 GCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAACCCGTTTAGC 324583
|||||| |||||||||| |||||||||||| || ||||||||||||||| ||||||| ||
Sbjct 1 GCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCGATCCCGTTTGGC 60
Query 324584 TCC 324586
|||
Sbjct 61 TCC 63
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102178472334478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |