Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq310551 233 3e-56 seq2815131 125 9e-24 seq2955700 84.2 3e-11 >seq310551 Length=517 Score = 233 bits (258), Expect = 3e-56 Identities = 240/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 136672 AGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTG 136731 |||||||| | | || || || || |||||| | |||||| ||||||||||||||| Sbjct 322 AGGGTGTGCAGCACTTCAACCAGCTCGCGCTGGGCATGCATGACGGCGTCGATGTCCTTG 263 Query 136732 TAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTG 136791 ||||||||||| ||||| |||||||| | ||||||||||||||||||||| | ||| Sbjct 262 TAGGCCATCGGAATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTG 203 Query 136792 GCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGG 136851 || ||||||||| ||| |||||||| || || | ||| || ||| || ||| Sbjct 202 GCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGG 143 Query 136852 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 136911 || |||||||| ||||||||||||||| || | |||||| ||||||||||||| | Sbjct 142 CCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAA 83 Query 136912 GACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCG 136971 || || ||||| || || || || ||||| | || | |||| | ||||||||||||| Sbjct 82 CTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCG 23 Query 136972 CCCTTGCGGGTCAC 136985 || ||||| ||||| Sbjct 22 CCTTTGCGCGTCAC 9 >seq2815131 Length=243 Score = 125 bits (138), Expect = 9e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 137247 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 137306 || ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || || Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73 Query 137307 GTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137366 ||| ||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||||||| Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13 Query 137367 GCCGCCCAGGGT 137378 | ||||| || Sbjct 12 GGTACCCAGCGT 1 >seq2955700 Length=463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 137575 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 137634 ||| ||||||| | || |||||||| ||||||| | || ||||| ||||||||| Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309 Query 137635 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 137670 ||||| ||||| || || |||||||| ||||||||| Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663500033305200