Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019405.1
Length=215710
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 233 3e-56
seq2815131 125 9e-24
seq2955700 84.2 3e-11
>seq310551
Length=517
Score = 233 bits (258), Expect = 3e-56
Identities = 240/314 (76%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 136672 AGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTG 136731
|||||||| | | || || || || |||||| | |||||| |||||||||||||||
Sbjct 322 AGGGTGTGCAGCACTTCAACCAGCTCGCGCTGGGCATGCATGACGGCGTCGATGTCCTTG 263
Query 136732 TAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTG 136791
||||||||||| ||||| |||||||| | ||||||||||||||||||||| | |||
Sbjct 262 TAGGCCATCGGAATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTG 203
Query 136792 GCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGG 136851
|| ||||||||| ||| |||||||| || || | ||| || ||| || |||
Sbjct 202 GCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGG 143
Query 136852 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 136911
|| |||||||| ||||||||||||||| || | |||||| ||||||||||||| |
Sbjct 142 CCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAA 83
Query 136912 GACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCG 136971
|| || ||||| || || || || ||||| | || | |||| | |||||||||||||
Sbjct 82 CTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCG 23
Query 136972 CCCTTGCGGGTCAC 136985
|| ||||| |||||
Sbjct 22 CCTTTGCGCGTCAC 9
>seq2815131
Length=243
Score = 125 bits (138), Expect = 9e-24
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 137247 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 137306
|| ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || ||
Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73
Query 137307 GTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137366
||| ||||| | ||| |||||||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13
Query 137367 GCCGCCCAGGGT 137378
| ||||| ||
Sbjct 12 GGTACCCAGCGT 1
>seq2955700
Length=463
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 137575 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 137634
||| ||||||| | || |||||||| ||||||| | || ||||| |||||||||
Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309
Query 137635 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 137670
||||| ||||| || || |||||||| |||||||||
Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 663500033305200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |