Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq310551 194 3e-44 seq2955700 100 5e-16 seq1605667 87.8 3e-12 seq2170069 84.2 4e-11 >seq310551 Length=517 Score = 194 bits (214), Expect = 3e-44 Identities = 251/347 (72%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329 ||||| || ||||||| |||||| |||||| | | || |||| || |||| Sbjct 349 TAACCTTTTACGCACACCACCTGACGCAGGGTGTGCAGCACTTCAACCAGCTCGCGCTGG 290 Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389 || ||||||| ||||| |||||| ||| |||| | || |||||||| | || Sbjct 289 GCATGCATGACGGCGTCGATGTCCTTGTAGGCCATCGGAATTTCATCGATCACATCGGCG 230 Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTC 168449 |||||||||||||| ||| |||||| || || ||| ||| | || | || Sbjct 229 TCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGGTGTTT 170 Query 168450 TTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCA 168509 ||||| | || |||| |||||||||||||||||||||||||||||| | || Sbjct 169 TTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACGACTCT 110 Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCG 168569 ||| |||| ||||||||||||||| || |||||||| ||||||||||| || || Sbjct 109 TCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAATCCCC 50 Query 168570 AGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGAT 168616 || ||| |||| | ||||||||||||||| ||||| ||||| | ||| Sbjct 49 AGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCACCAGGAT 3 >seq2955700 Length=463 Score = 100 bits (110), Expect = 5e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 169236 GCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTAC 169295 || ||||||||||||||| | || ||||| |||||||||||||| ||||| ||||| | Sbjct 271 GCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCCGCC 330 Query 169296 GGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGG 169355 ||||| | ||| || || ||||| || || | || | || | || ||| Sbjct 331 GGGATAATCGCGCCCACCGTGGGGATTACGCTGCCGATGGTCGAACCCTTGCCCAGGTGC 390 Query 169356 ACGTCGGGCATCACCGCGACGTGCTTGAACACGAACGGCAGCCCGGCG 169403 || || ||||||||||||| ||||||||| | ||||||| | |||| Sbjct 391 ACATCCGGCATCACCGCGAGGTGCTTGAAGATAAACGGCATCTTGGCG 438 >seq1605667 Length=126 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008 || ||| |||| |||||||||||||||| |||||||||| ||||||||||| |||| Sbjct 83 GCCCCAGCTTTGTCGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 24 Query 133009 TCGAGGGTTCAAATCCCTCCCCC 133031 ||| ||||||||||| ||||| Sbjct 23 TCGTCGGTTCAAATCCGGCCCCC 1 >seq2170069 Length=127 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008 || ||| |||| |||||| ||||||||| |||||||||| ||||||||||| |||| Sbjct 84 GCCCCAGCTTTGTCGCGGGGGGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 25 Query 133009 TCGAGGGTTCAAATCCCTCCCCCG 133032 ||| ||||||||||| |||||| Sbjct 24 TCGTCGGTTCAAATCCGGCCCCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 861184095252120