Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019406.1
Length=279967
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 194 3e-44
seq2955700 100 5e-16
seq1605667 87.8 3e-12
seq2170069 84.2 4e-11
>seq310551
Length=517
Score = 194 bits (214), Expect = 3e-44
Identities = 251/347 (72%), Gaps = 0/347 (0%)
Strand=Plus/Minus
Query 168270 TAACCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGG 168329
||||| || ||||||| |||||| |||||| | | || |||| || ||||
Sbjct 349 TAACCTTTTACGCACACCACCTGACGCAGGGTGTGCAGCACTTCAACCAGCTCGCGCTGG 290
Query 168330 GCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCG 168389
|| ||||||| ||||| |||||| ||| |||| | || |||||||| | ||
Sbjct 289 GCATGCATGACGGCGTCGATGTCCTTGTAGGCCATCGGAATTTCATCGATCACATCGGCG 230
Query 168390 TCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTC 168449
|||||||||||||| ||| |||||| || || ||| ||| | || | ||
Sbjct 229 TCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGGTGTTT 170
Query 168450 TTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTGCACGAGCAGAAGGCGTCA 168509
||||| | || |||| |||||||||||||||||||||||||||||| | ||
Sbjct 169 TTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACGACTCT 110
Query 168510 GCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCG 168569
||| |||| ||||||||||||||| || |||||||| ||||||||||| || ||
Sbjct 109 TCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAATCCCC 50
Query 168570 AGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGAT 168616
|| ||| |||| | ||||||||||||||| ||||| ||||| | |||
Sbjct 49 AGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCACCAGGAT 3
>seq2955700
Length=463
Score = 100 bits (110), Expect = 5e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 169236 GCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCAGCCGATGTCGACGCCGACCGCGTAC 169295
|| ||||||||||||||| | || ||||| |||||||||||||| ||||| ||||| |
Sbjct 271 GCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCCGCC 330
Query 169296 GGGATCACCGCATCCTTGGTCGGGATCACCGAACCAACGGCTGCGCCGTACCCGGCGTGG 169355
||||| | ||| || || ||||| || || | || | || | || |||
Sbjct 331 GGGATAATCGCGCCCACCGTGGGGATTACGCTGCCGATGGTCGAACCCTTGCCCAGGTGC 390
Query 169356 ACGTCGGGCATCACCGCGACGTGCTTGAACACGAACGGCAGCCCGGCG 169403
|| || ||||||||||||| ||||||||| | ||||||| | ||||
Sbjct 391 ACATCCGGCATCACCGCGAGGTGCTTGAAGATAAACGGCATCTTGGCG 438
>seq1605667
Length=126
Score = 87.8 bits (96), Expect = 3e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008
|| ||| |||| |||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 83 GCCCCAGCTTTGTCGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 24
Query 133009 TCGAGGGTTCAAATCCCTCCCCC 133031
||| ||||||||||| |||||
Sbjct 23 TCGTCGGTTCAAATCCGGCCCCC 1
>seq2170069
Length=127
Score = 84.2 bits (92), Expect = 4e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008
|| ||| |||| |||||| ||||||||| |||||||||| ||||||||||| ||||
Sbjct 84 GCCCCAGCTTTGTCGCGGGGGGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 25
Query 133009 TCGAGGGTTCAAATCCCTCCCCCG 133032
||| ||||||||||| ||||||
Sbjct 24 TCGTCGGTTCAAATCCGGCCCCCG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 861184095252120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |