Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq310551 228 1e-54 seq2815131 125 1e-23 seq2955700 84.2 3e-11 >seq310551 Length=517 Score = 228 bits (252), Expect = 1e-54 Identities = 239/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 135432 AGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTG 135491 |||||||| | | || || || || |||||| | |||||| ||||||||||||||| Sbjct 322 AGGGTGTGCAGCACTTCAACCAGCTCGCGCTGGGCATGCATGACGGCGTCGATGTCCTTG 263 Query 135492 TAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTG 135551 ||||||||||| ||||| |||||||| | |||||||| |||||||||||| | ||| Sbjct 262 TAGGCCATCGGAATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTG 203 Query 135552 GCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGG 135611 || ||||||||| ||| |||||||| || || | ||| || ||| || ||| Sbjct 202 GCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGG 143 Query 135612 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 135671 || |||||||| ||||||||||||||| || | |||||| ||||||||||||| | Sbjct 142 CCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAA 83 Query 135672 GACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCG 135731 || || ||||| || || || || ||||| | || | |||| | ||||||||||||| Sbjct 82 CTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCG 23 Query 135732 CCCTTGCGGGTCAC 135745 || ||||| ||||| Sbjct 22 CCTTTGCGCGTCAC 9 >seq2815131 Length=243 Score = 125 bits (138), Expect = 1e-23 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 136007 CTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCG 136065 || ||||||| |||||||||| || | |||||||| ||||| ||||| ||||| || | Sbjct 132 CTGCTTGGCCAGCTCGATGAAG-TAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGG 74 Query 136066 AGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGC 136125 |||| ||||| | ||| |||||||| |||| ||| ||||||||||||| ||||||||||| Sbjct 73 AGTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGC 14 Query 136126 CGCCGCCCAGGGT 136138 || ||||| || Sbjct 13 CGGTACCCAGCGT 1 >seq2955700 Length=463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 136335 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 136394 ||| ||||||| | || |||||||| ||||||| | || ||||| ||||||||| Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309 Query 136395 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 136430 ||||| ||||| || || |||||||| ||||||||| Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 673403156628840