Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 228 1e-54
seq2815131 125 1e-23
seq2955700 84.2 3e-11
>seq310551
Length=517
Score = 228 bits (252), Expect = 1e-54
Identities = 239/314 (76%), Gaps = 0/314 (0%)
Strand=Plus/Minus
Query 135432 AGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTG 135491
|||||||| | | || || || || |||||| | |||||| |||||||||||||||
Sbjct 322 AGGGTGTGCAGCACTTCAACCAGCTCGCGCTGGGCATGCATGACGGCGTCGATGTCCTTG 263
Query 135492 TAGGCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTG 135551
||||||||||| ||||| |||||||| | |||||||| |||||||||||| | |||
Sbjct 262 TAGGCCATCGGAATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTG 203
Query 135552 GCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGG 135611
|| ||||||||| ||| |||||||| || || | ||| || ||| || |||
Sbjct 202 GCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGG 143
Query 135612 CCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAG 135671
|| |||||||| ||||||||||||||| || | |||||| ||||||||||||| |
Sbjct 142 CCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAA 83
Query 135672 GACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCG 135731
|| || ||||| || || || || ||||| | || | |||| | |||||||||||||
Sbjct 82 CTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCG 23
Query 135732 CCCTTGCGGGTCAC 135745
|| ||||| |||||
Sbjct 22 CCTTTGCGCGTCAC 9
>seq2815131
Length=243
Score = 125 bits (138), Expect = 1e-23
Identities = 109/133 (82%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 136007 CTCCTTGGCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCG 136065
|| ||||||| |||||||||| || | |||||||| ||||| ||||| ||||| || |
Sbjct 132 CTGCTTGGCCAGCTCGATGAAG-TAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGG 74
Query 136066 AGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGC 136125
|||| ||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||||||
Sbjct 73 AGTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGC 14
Query 136126 CGCCGCCCAGGGT 136138
|| ||||| ||
Sbjct 13 CGGTACCCAGCGT 1
>seq2955700
Length=463
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 136335 AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 136394
||| ||||||| | || |||||||| ||||||| | || ||||| |||||||||
Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309
Query 136395 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 136430
||||| ||||| || || |||||||| |||||||||
Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 673403156628840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |