Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq2955700 150 2e-31 seq2815131 141 1e-28 seq310551 132 7e-26 >seq2955700 Length=463 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140268 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCC 140327 || || || |||||| |||||| | |||||| | |||| ||||||||| || Sbjct 208 CCATGGGGCACGGCGGCCTCGATGGCACAACGCAGCCCGTGGAGGTTGTCGGGCAAATCG 267 Query 140328 GAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCC 140387 ||| |||||| ||||||| |||| ||||| ||||||||||||||||||||||| ||| Sbjct 268 CTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCC 327 Query 140388 GCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATG 140447 |||||||| || |||||| || ||||| || ||| | |||||| || |||||| | Sbjct 328 GCCGGGATAATCGCGCCCACCGTGGGGATTACGCTGCCGATGGTCGAACCCTTGCCCAGG 387 Query 140448 TGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490 || || |||||||||| || | ||| | ||| ||||||| Sbjct 388 TGCACATCCGGCATCACCGCGAGGTGCTTGAAGATAAACGGCA 430 >seq2815131 Length=243 Score = 141 bits (156), Expect = 1e-28 Identities = 178/237 (75%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 139879 CCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCC-GGCTCGCCTTCCGACAGCCACGCG 139937 ||||| | || || ||| |||||| | | | | |||| ||| || | ||| | || Sbjct 232 CCCAGTCCACCGCGAACACATAGTCGCCGTAGTGCTGGCT-GCCCTCGGGCAGGTAGGCC 174 Query 139938 AGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCG 139997 ||||||| |||| || | || || | ||| | || |||| || ||||||| |||| Sbjct 173 AGGTCCTGGTCGGGCAGGTT--GATCATCCAGCGGC-GCATTTCCTGCTTGGCCAGCTCG 117 Query 139998 ATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCA 140056 |||||| || | |||||||| ||||| ||||| ||||| || ||||| ||||| | ||| Sbjct 116 ATGAAG-TAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGAGTGCAGCATGAACCA 58 Query 140057 GACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGT 140113 |||||||| |||| ||| ||||||||||||| ||||||||||||| |||||||| Sbjct 57 CACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCCGGTACCCAGCGT 1 >seq310551 Length=517 Score = 132 bits (146), Expect = 7e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGCCTTGGC 139564 ||||||||| ||| | || || ||||||||| ||| |||||||| | || || Sbjct 224 GCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGC 165 Query 139565 GGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGTT 139624 |||||| |||||| || || |||||||| ||||||||||||||| || |||| Sbjct 164 TTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTT 105 Query 139625 GCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTG 139684 |||| ||||||||||||| | || || ||||| || || || || || || | || Sbjct 104 GCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTC 45 Query 139685 GTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCAC 139720 | |||| | |||||||||||||| ||||| ||||| Sbjct 44 GCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCAC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688142474380800