Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019408.1
Length=223720
Score E
Sequences producing significant alignments: (Bits) Value
seq2955700 150 2e-31
seq2815131 141 1e-28
seq310551 132 7e-26
>seq2955700
Length=463
Score = 150 bits (166), Expect = 2e-31
Identities = 167/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 140268 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGGTCC 140327
|| || || |||||| |||||| | |||||| | |||| ||||||||| ||
Sbjct 208 CCATGGGGCACGGCGGCCTCGATGGCACAACGCAGCCCGTGGAGGTTGTCGGGCAAATCG 267
Query 140328 GAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACGGCC 140387
||| |||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||
Sbjct 268 CTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCC 327
Query 140388 GCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGCCCATG 140447
|||||||| || |||||| || ||||| || ||| | |||||| || |||||| |
Sbjct 328 GCCGGGATAATCGCGCCCACCGTGGGGATTACGCTGCCGATGGTCGAACCCTTGCCCAGG 387
Query 140448 TGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCA 140490
|| || |||||||||| || | ||| | ||| |||||||
Sbjct 388 TGCACATCCGGCATCACCGCGAGGTGCTTGAAGATAAACGGCA 430
>seq2815131
Length=243
Score = 141 bits (156), Expect = 1e-28
Identities = 178/237 (75%), Gaps = 7/237 (3%)
Strand=Plus/Minus
Query 139879 CCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCC-GGCTCGCCTTCCGACAGCCACGCG 139937
||||| | || || ||| |||||| | | | | |||| ||| || | ||| | ||
Sbjct 232 CCCAGTCCACCGCGAACACATAGTCGCCGTAGTGCTGGCT-GCCCTCGGGCAGGTAGGCC 174
Query 139938 AGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGGCCTTCTCG 139997
||||||| |||| || | || || | ||| | || |||| || ||||||| ||||
Sbjct 173 AGGTCCTGGTCGGGCAGGTT--GATCATCCAGCGGC-GCATTTCCTGCTTGGCCAGCTCG 117
Query 139998 ATGAAGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCA 140056
|||||| || | |||||||| ||||| ||||| ||||| || ||||| ||||| | |||
Sbjct 116 ATGAAG-TAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGAGTGCAGCATGAACCA 58
Query 140057 GACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGCGT 140113
|||||||| |||| ||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 57 CACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCCGGTACCCAGCGT 1
>seq310551
Length=517
Score = 132 bits (146), Expect = 7e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCGTGAAGGCGGCCTTGGC 139564
||||||||| ||| | || || ||||||||| ||| |||||||| | || ||
Sbjct 224 GCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGGTGTTTTTCGC 165
Query 139565 GGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGCGTT 139624
|||||| |||||| || || |||||||| ||||||||||||||| || ||||
Sbjct 164 TTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACGACTCTTCGTT 105
Query 139625 GCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTG 139684
|||| ||||||||||||| | || || ||||| || || || || || || | ||
Sbjct 104 GCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAATCCCCAGCTC 45
Query 139685 GTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCAC 139720
| |||| | |||||||||||||| ||||| |||||
Sbjct 44 GCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCAC 9
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 688142474380800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |