Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019410.1
Length=221828
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 176 6e-39
seq2815131 125 1e-23
seq2955700 84.2 3e-11
>seq310551
Length=517
Score = 176 bits (194), Expect = 6e-39
Identities = 184/242 (76%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 137303 ATTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGG 137362
||||| |||||||| ||||||||||||||||||||||| | ||||| |||||||
Sbjct 250 ATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGG 191
Query 137363 TCCTCCAGAGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422
|| ||| |||||||| || || | ||| || ||| || ||||| ||||||||
Sbjct 190 TCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGG 131
Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482
||||||||||||||| || | |||||| ||||||||||||| | || || |||
Sbjct 130 CTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCC 71
Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTC 137542
|| || || || || ||||| | || | |||| | ||||||||||||||| ||||| |||
Sbjct 70 ATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTC 11
Query 137543 AC 137544
||
Sbjct 10 AC 9
>seq2815131
Length=243
Score = 125 bits (138), Expect = 1e-23
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 137806 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 137865
|| ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || ||
Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73
Query 137866 GTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925
||| ||||| | ||| |||||||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13
Query 137926 GCCGCCCAGGGT 137937
| ||||| ||
Sbjct 12 GGTACCCAGCGT 1
>seq2955700
Length=463
Score = 84.2 bits (92), Expect = 3e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 138134 AGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 138193
||| ||||||| | || |||||||| ||||||| | || ||||| |||||||||
Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309
Query 138194 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 138229
||||| ||||| || || |||||||| |||||||||
Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 682321812893280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |