Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq310551 176 6e-39 seq2815131 125 1e-23 seq2955700 84.2 3e-11 >seq310551 Length=517 Score = 176 bits (194), Expect = 6e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 137303 ATTTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGG 137362 ||||| |||||||| ||||||||||||||||||||||| | ||||| ||||||| Sbjct 250 ATTTCATCGATCACATCGGCGTCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGG 191 Query 137363 TCCTCCAGAGTGAAGGTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGC 137422 || ||| |||||||| || || | ||| || ||| || ||||| |||||||| Sbjct 190 TCGGCCACCGTGAAGGTGTTTTTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGG 131 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCC 137482 ||||||||||||||| || | |||||| ||||||||||||| | || || ||| Sbjct 130 CTGCACGAGCAGAACGACTCTTCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCC 71 Query 137483 ATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTC 137542 || || || || || ||||| | || | |||| | ||||||||||||||| ||||| ||| Sbjct 70 ATGGAACCCGGAATAATCCCCAGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTC 11 Query 137543 AC 137544 || Sbjct 10 AC 9 >seq2815131 Length=243 Score = 125 bits (138), Expect = 1e-23 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 137806 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 137865 || ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || || Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73 Query 137866 GTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 137925 ||| ||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||||||| Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13 Query 137926 GCCGCCCAGGGT 137937 | ||||| || Sbjct 12 GGTACCCAGCGT 1 >seq2955700 Length=463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 138134 AGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCG 138193 ||| ||||||| | || |||||||| ||||||| | || ||||| ||||||||| Sbjct 250 AGGTTGTCGGGCAAATCGCTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCG 309 Query 138194 ATGTCGACGCCGACGGCGGCCGGGATGATCGCGCCC 138229 ||||| ||||| || || |||||||| ||||||||| Sbjct 310 ATGTCCACGCCCACCGCCGCCGGGATAATCGCGCCC 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682321812893280