Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019411.1
Length=219216
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 165 1e-35
seq2815131 125 1e-23
seq2955700 87.8 2e-12
>seq310551
Length=517
Score = 165 bits (182), Expect = 1e-35
Identities = 172/226 (76%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 136083 CGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGG 136142
||||||||||||||||||||||| | ||||| ||||||||| ||| |||||||
Sbjct 234 CGGCGTCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGG 175
Query 136143 TCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACG 136202
| || || | ||| || ||| || ||||| |||||||| ||||||||||||||
Sbjct 174 TGTTTTTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACG 115
Query 136203 AGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGA 136262
| || |||||||| ||||||||||||| | || || ||||| || || || || |
Sbjct 114 ACTCTTCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAA 55
Query 136263 TCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCAC 136308
|||| | || | |||| | ||||||||||||||| ||||| |||||
Sbjct 54 TCCCCAGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCAC 9
>seq2815131
Length=243
Score = 125 bits (138), Expect = 1e-23
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 136570 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 136629
|| ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || ||
Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73
Query 136630 GTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136689
||| ||||| | ||| |||||||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13
Query 136690 GCCGCCCAGGGT 136701
| ||||| ||
Sbjct 12 GGTACCCAGCGT 1
>seq2955700
Length=463
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 136856 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGGAAGGTCC 136915
|| || || |||||| |||||| | || ||| | |||| ||||||| | ||
Sbjct 208 CCATGGGGCACGGCGGCCTCGATGGCACAACGCAGCCCGTGGAGGTTGTCGGGCAAATCG 267
Query 136916 GACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCG 136975
|||||||| ||||||| | || ||||| |||||||||||||| ||||| || ||
Sbjct 268 CTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCC 327
Query 136976 GCCGGGATGATCGCGCCC 136993
|||||||| |||||||||
Sbjct 328 GCCGGGATAATCGCGCCC 345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 674286100522560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |