Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq310551 165 1e-35 seq2815131 125 1e-23 seq2955700 87.8 2e-12 >seq310551 Length=517 Score = 165 bits (182), Expect = 1e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 136083 CGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGG 136142 ||||||||||||||||||||||| | ||||| ||||||||| ||| ||||||| Sbjct 234 CGGCGTCCTTGCGGCACTCCACGTGGGCCGTGGCGCGGATCTGGTCGGCCACCGTGAAGG 175 Query 136143 TCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACG 136202 | || || | ||| || ||| || ||||| |||||||| |||||||||||||| Sbjct 174 TGTTTTTCGCTTTGGTGCGGCTCATGGTGCGGCCGGCGCCGTGGCTGCACGAGCAGAACG 115 Query 136203 AGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGA 136262 | || |||||||| ||||||||||||| | || || ||||| || || || || | Sbjct 114 ACTCTTCGTTGCCCAGGCCGCGCACGATGAAACTTTTTGCGCCCATGGAACCCGGAATAA 55 Query 136263 TCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCAC 136308 |||| | || | |||| | ||||||||||||||| ||||| ||||| Sbjct 54 TCCCCAGCTCGCCCTTTTTCGCCGACACCGCGCCTTTGCGCGTCAC 9 >seq2815131 Length=243 Score = 125 bits (138), Expect = 1e-23 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 136570 CTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 136629 || ||||||| |||||||||| | |||||||| ||||| ||||| ||||| || || Sbjct 132 CTGCTTGGCCAGCTCGATGAAGTAGGTGCCGATGGCATTGCCTACGCCACGCGAACCGGA 73 Query 136630 GTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 136689 ||| ||||| | ||| |||||||| |||| ||| ||||||||||||| |||||||||||| Sbjct 72 GTGCAGCATGAACCACACGCGCTGCTCCTGGTCCAGGCAGACCTCGACGAAGTGGTTGCC 13 Query 136690 GCCGCCCAGGGT 136701 | ||||| || Sbjct 12 GGTACCCAGCGT 1 >seq2955700 Length=463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 136856 CCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGCGAGGCTGTCGGGAAGGTCC 136915 || || || |||||| |||||| | || ||| | |||| ||||||| | || Sbjct 208 CCATGGGGCACGGCGGCCTCGATGGCACAACGCAGCCCGTGGAGGTTGTCGGGCAAATCG 267 Query 136916 GACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCG 136975 |||||||| ||||||| | || ||||| |||||||||||||| ||||| || || Sbjct 268 CTGGCGGTCAGCGTGGTGCGCGCGGCAATCATCCCGCAGCCGATGTCCACGCCCACCGCC 327 Query 136976 GCCGGGATGATCGCGCCC 136993 |||||||| ||||||||| Sbjct 328 GCCGGGATAATCGCGCCC 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 674286100522560