Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019419.2 Length=43457 Score E Sequences producing significant alignments: (Bits) Value seq3088451 104 6e-18 >seq3088451 Length=13260 Score = 104 bits (114), Expect = 6e-18 Identities = 213/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 27504 ACCAACTGATCGCAGCGCTGCGCGATCTGGTAGAGCGCGTACCGGTTTAACATTTGCGGT 27563 |||||||| ||||| ||| ||||| |||| ||| | || || | ||| ||| Sbjct 12148 ACCAACTGGTCGCAATACTGTGCGATTCGGTAAAGCTCCCACTTGTCCACCATCCACGGC 12089 Query 27564 TTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATATCGTACCAGTGCCACGCA 27623 ||||| || || || || || || || || | || || |||| | ||| || Sbjct 12088 TTGATGCGGCGGCCCAGACCAAAACGGTCTTGGGTGCAGATGCCGTAGGTGATCCAGGCC 12029 Query 27624 GGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCCCCGGAATAAGTATGATTA 27683 ||||||| ||||| || ||| | |||||||||||| | ||||| || || | Sbjct 12028 GGGTTATTGGTCCAGGCCTCTTTCATGGTGCCGTCCCAGGCGCCGGAGTAGGTGCGGGCC 11969 Query 27684 ATCGGGTCGTAGTTGTTCGGTATTAGAACTTTGCGGCCTTTGCACTTGATGGACACGCGC 27743 | ||| ||||||||| |||| | | ||| | || ||||| | || |||| | Sbjct 11968 ACCGGATCGTAGTTGCTCGGCACCTGCCACCGGCGCGCCTTACACTTCACGGTCACGGCC 11909 Query 27744 GGGATGTTCTGGAACGCTTTGGCGTCGAACTCCACAAACAACAGCGCGGTTAGCGGGTAA 27803 || |||||| |||| | |||||||||||| || |||| ||||||||| ||||| Sbjct 11908 GGAATGTTCGTGAACTGCTCGGCGTCGAACTCGACGAACAGCAGCGCGGTGTTTGGGTAG 11849 Query 27804 CGCAGGCGGGCGTCGAT 27820 ||||| |||||||| Sbjct 11848 CGCAGCTTTGCGTCGAT 11832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133844997753858