Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019451.1 Length=66116 Score E Sequences producing significant alignments: (Bits) Value seq3084777 84.2 9e-12 >seq3084777 Length=3074 Score = 84.2 bits (92), Expect = 9e-12 Identities = 119/167 (71%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 5773 GAAATCGAATCGATGATCGTGGATGGCCGAGTGGTTGAAGCAAAGCCGACGCGGCAGCTC 5832 ||| | ||| || || |||||||| || |||||| ||||| || | ||||| || Sbjct 1367 GAAGTTGAAGCGGTGGTCGTGGATCGCAGAGTGGGCAAAGCAGGCACGCCTGGGCAGTTC 1426 Query 5833 CGGGTGCCAAACATGGAGGCG---ACCGGCCGGAAGTTGGACCTGAATGAACCCCAGGCC 5889 |||||||| || || ||||| | | | || |||||||| | || |||||||| Sbjct 1427 AGGGTGCCAGACGTGCAGGCGTTGATTGCCTTCCAGCTGGACCTGCACAAAGCCCAGGCC 1486 Query 5890 GTGCAGAGTGATCTTGTCCTTCATCGGGTCATGGACGGTGCTCATGG 5936 |||||| ||||||||||| |||| ||| | || | |||||| || Sbjct 1487 GTGCAGGGTGATCTTGTCGGTCATTACGTCGTCGATGATGCTCACGG 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203487297887467