Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019457.1 Length=44492 Score E Sequences producing significant alignments: (Bits) Value seq3087968 179 1e-40 seq108461 131 5e-26 >seq3087968 Length=6546 Score = 179 bits (198), Expect = 1e-40 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10863 GGTTGTGTTATTGGACCCATCCGCACAGTCGCATGGCGAATCCTCGATGCCCAATATTTC 10922 |||||||| |||||||| | ||| |||| ||||| |||| || |||||||||||| Sbjct 1 GGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCCCAATATTTC 60 Query 10923 GGATTGGCCCAACGACGCAAGCGTGTGTTTGTTGTCGCAAGTGCTCGAAAAGGATTCGAT 10982 || |||||||||||||| |||||||| |||||||||||||||||| | || |||||| Sbjct 61 GGCCTGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGAT 120 Query 10983 CCCGCAGAAGTATTATTTGAGCGCGAAGGCGTGCGAAGGGATTCTGCGCCGAGCCGAGAA 11042 || | || ||| | ||||||||||||||| |||| ||||| |||||||| |||||| Sbjct 121 CCAACCGAGGTACTTTTTGAGCGCGAAGGCTTGCGCCGGGATACTGCGCCGCGCCGAGGC 180 Query 11043 GCGTTGCAAGAAGCTGCCGGAA 11064 | | |||||| | | |||||| Sbjct 181 GAGGGGCAAGACGTTACCGGAA 202 >seq108461 Length=6150 Score = 131 bits (144), Expect = 5e-26 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 10926 TTGGCCCAACGACGCAAGCGTGTGTTTGTTGTCGCAAGTGCTCGAAAAGGATTCGATCCC 10985 ||||||||||||||| |||||||| |||||||||||||||||| | || ||||||||| Sbjct 184 TTGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGATCCC 243 Query 10986 GCAGAAGTATTATTTGAGCGCGAAGGCGTGCGAAGGGATTCTGCGCCGAGCCGAG 11040 ||| ||| | |||||||| ||||||||||| ||||| |||||||| |||||| Sbjct 244 ACAGCGGTACTTTTTGAGCGAGAAGGCGTGCGCCGGGATACTGCGCCGCGCCGAG 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137035526616228