Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq3088488 358 1e-94 seq3088503 309 6e-80 seq3084702 114 3e-21 >seq3088488 Length=17142 Score = 358 bits (396), Expect = 1e-94 Identities = 786/1160 (68%), Gaps = 26/1160 (2%) Strand=Plus/Minus Query 27110 GATTACCACCACGGGGTGCGCGTTGTTGAAATCAACGAGGGCACCCGACCTATTACCACG 27169 ||||| | |||||| ||||| || | ||| ||||||| |||||||| || ||| ||| Sbjct 16622 GATTATCTCCACGGCGTGCGGGTCATCGAACTCAACGACGGCACCCGCCCCATTCGCACT 16563 Query 27170 GTGAGCACTGCCATCGTGGGCATGGTCTGCACCGGCGATGATGCTGATGCGTCCGTGTTC 27229 | ||| || || | |||||||| ||||||| || ||||| || | ||| ||| Sbjct 16562 ATTCCCACCGCAGTCATCGGCATGGTTTGCACCGCTGAAGATGCGGACCCACTCGTTTTC 16503 Query 27230 CCCCTCAATAAGCCGGTCCTGCTGACTGATGTGCTCACCGCCAGCGGTAAAGCGGGGGAG 27289 || || | | || ||||| | || | |||| |||||| ||| || || || | Sbjct 16502 CCTCTGGACACTCCAGTCCTCATCACCAACGTGCAAACCGCCGTCGGCAAGGCCGGCGTC 16443 Query 27290 TCCGGCACGCTGGCCCGCTCGCTGGACGCGATTGCAGATCAGGCAAAACCCGTGAC--TG 27347 ||||| ||||| | ||| | | || || || ||| | || || | || | Sbjct 16442 AAGGGCACCCTGGCTGCCAGCCTGCAAGGCATCGCCGACCAGACCAAGCC--TTACGTTA 16385 Query 27348 TCGTTGTGCGTGTGGCGCAGGGCGAAACCGAAGCGGAAACCACCTCCAATATTATCGGCG 27407 |||| || || || | |||| ||||||| || || | | || |||| Sbjct 16384 TCGTGGTACGGGTCAAAGAAGGCGCTGACGAAGCGACGACTACGAGCGCCCTGATTGGCG 16325 Query 27408 GCGTAACTTCCGACGGTAAGAAAACGGGCATGAAAGCGCTACTGTCGGCGCAGTCGCAGC 27467 | ||| | |||| | | || ||||||||||| || || | || | || | Sbjct 16324 GTACAACACCAACCGGTCAATACACCGGCATGAAAGCTCTGCTCGCAGCCAAATCACGCG 16265 Query 27468 TCGGTGTCAAGCCGTGCATTCTTGGGGTGCCGGGACATGACACTCAGGCCGTTGCTACTG 27527 | || | | ||| | || ||||| ||||| || | |||| | | | || || || | Sbjct 16264 TGGGCATGACTCCGCGTATCCTTGGCGTGCCAGGCCTCGACAGTTTGCCAGTAGCCACCG 16205 Query 27528 AACTGCTGGGCGTGGCGCAAAG-CTTGCGCGGGTTTGCCTACCTTGCTGCTAATGG--CT 27584 || | | | || ||||| | |||||| ||||| ||| | || ||| || Sbjct 16204 CCCTCGGCGCCATCGC-CAAAGACCTGCGCGCCTTTGCATACGTAAGCGCC--TGGAACT 16148 Query 27585 GCAAAACGGTGGAGGAAGCTATTGCCTATCGCGAGAATTTCAGTCAGCGCGAGGGAATGC 27644 ||||||| ||| || | | || || |||||||| ||| || ||||| ||| Sbjct 16147 GCAAAACCAAGGAAGAGGTAGTGGCGTACCGCGAGAACTTCGGTGCCCGCGAAATGATGG 16088 Query 27645 TGATCTGGCCTGACTTCATCAACTTTGACACCGTGCTGAAAGCAGAC-GCGACGGCTTAC 27703 |||| ||||| |||||| | |||| ||||| || | || |||| || | |||| Sbjct 16087 TGATTTGGCCGGACTTCCTGAACTGGGACACTGT-CACCAACAAGACCGCCAGCGCTTCG 16029 Query 27704 GCCTCCGCCCGTGCGCTCGGCCTGCGTGCCAAAATCGACGAGCAGATCGGCTGGCATAAA 27763 ||| ||||| || |||||||| || ||||| |||||| | ||| || ||||||||| Sbjct 16028 GCCGTGGCCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCAAGAGACGGGTTGGCATAAA 15969 Query 27764 ACCCTGTCCAATGTGGGTGTGAACGGTGTCACCGGCATTTCCGCTGATGTGTTCTGGGAT 27823 ||||||||||| |||| |||| || || ||||| || ||| || |||||||||||| Sbjct 15968 ACCCTGTCCAACGTGGCCGTGAGTGGCGTGACCGGTATCAGCGCCGACGTGTTCTGGGAT 15909 Query 27824 CTGCAGGACCCGGCAACCGATGCGGGACTGC-TGAACAAAAATGACGTCACCACATTGAT 27882 ||||| |||| || ||||| || ||| | | |||| || ||||||||||| |||| Sbjct 15908 CTGCAAAACCCAGCCACCGACGCCA-ACTACCTCAACAGCAACGACGTCACCACCCTGAT 15850 Query 27883 C--CGCAAAGACGGCTTCCGCTTCTGGGGTTCCCGTTGTCTCAGTGACGATCCGCTGTTT 27940 | ||| || ||| || |||||||||||| ||| |||||| || ||| |||| Sbjct 15849 CAACGCCAA--CGGTTTTCGCTTCTGGGGTAGCCGCACCTGCAGTGATGACCCGTTGTTC 15792 Query 27941 GCTTTTGAGAACTACACCCGTACGGCGCAGGTGCTGGCTGACACTATGGCGGAGGCGCAC 28000 || || || ||||||||||| || |||||| | || || ||||| |||| || |||||| Sbjct 15791 GCCTTCGAAAACTACACCCGCACCGCGCAGATCCTCGCGGACACCATGGGCGAAGCGCAC 15732 Query 28001 ATGTGGGCGGTGGATGGCGTGCTTAATCCGTCGCTGGCCCGCGACATTATTGAAGGACTA 28060 |||||||| || || || | | | || |||| |||||| | | ||||| || Sbjct 15731 ATGTGGGCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGCGACCTGGTCGAAGGCGTA 15672 Query 28061 CGCGCCAAGATGCGC-AGTCTGGTCAACCAGGGATACCTGATTGGTGGTGACTGCTGG-- 28117 |||||||||||||| ||| || |||||| |||||||| || || |||||| Sbjct 15671 AGCGCCAAGATGCGCGAGT-TGAAATCCCAGGGCTACCTGATCGGCGGCAGTTGCTGGAA 15613 Query 28118 -CTGGATGAGTCTGTTAACGATAAAGACGCCCTTAAAGCCGGGAAACTGACCATCGATTA 28176 | ||| || | ||| |||||| |||| || ||||| || || | ||||| Sbjct 15612 CCCGGACGA---CATCAACACCAAAGACACCCTCAAGGCCGGCAAGCTCTGGCTTGATTA 15556 Query 28177 TGACTACACGCCGGTGCCTCCGCTTGAAAACCTGATGCTGCGCCAGCGCATCACCGATCG 28236 |||||||| || ||||| || |||||| |||| | | |||||||| |||||||| || Sbjct 15555 CGACTACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCAGCGAATCACCGACCG 15496 Query 28237 TTACCTGGTCGATTTTGCCA 28256 ||||||| |||| || |||| Sbjct 15495 TTACCTGATCGACTTCGCCA 15476 >seq3088503 Length=21467 Score = 309 bits (342), Expect = 6e-80 Identities = 1019/1564 (65%), Gaps = 54/1564 (3%) Strand=Plus/Minus Query 12773 TCACTCATCAAAAAATCTCCACAATGTTGCTGGTATTGG---CGGATTCGCCCTGCAGCG 12829 ||| ||||||||||||||||| | | |||||||| ||| | |||| |||| Sbjct 11544 TCAGTCATCAAAAAATCTCCA---TTCGCCCGGTATTGGAGGCGGTCTGCCCCTCAAGCG 11488 Query 12830 GTTCGTTAAACAGTGCATGCATCGTTGCCCAGGCCAAATCTGCGTGGCTGGCCTCTTCGC 12889 ||||||| || ||| || | |||||||||| || || |||| || | ||| Sbjct 11487 GTTCGTTTTGCAATGCGTGAAATAGCGCCCAGGCCAGGTCGGCATGGCCGGTGTTGTCGT 11428 Query 12890 TGCGGCTGGCTTCATAGGTTGGACGGTTG-CCGCTGGCGGTGGTGGCGCGGCGGATAGCC 12948 |||| | || ||||| | || | | |||| |||||| | |||||| ||| Sbjct 11427 TGCGCCCTGCGGTGTAGGT-GTACTGGCGACCGCCTGCGGTGACCGTCTTGCGGATCGCC 11369 Query 12949 ATAAAGGACTGCGCAATGTCGGTGTGCCCAGCGTCAAACTCCAGACGGCGGTGGCTGATA 13008 || | |||||||| |||||||| ||| ||||| |||||||| |||| || ||| Sbjct 11368 ATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCGTTATGGATC 11309 Query 13009 ATGTCGTACGCCTTGAGCACCAGGGCATTTTTGACGTTAGGGTTGTAGACAAACTCCCGC 13068 | ||| || ||||| ||||||||| ||||||| | || ||| || | Sbjct 11308 ACGTCATAGGCCTTCAGCACCAGGCGTGTTTTGACTTCGGGCGAATAGCTGAAGGTGGTC 11249 Query 13069 ACGGCAGGAAAGAACGCTTTTACGTTCTCATAAACACCGTGCCCGACGCCGGTCGAGTCG 13128 || || || |||||| || || || ||| || | ||||| || Sbjct 11248 ACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGCCCGGTGACATCA 11189 Query 13129 ATGCCGATATAGGTCACGTTGTACTGCTGCGTCAGT--TTTTTGATAGCATCAGCCTGGG 13186 || |||||||||||||| ||| | | || ||| ||||||||| | ||||||| Sbjct 11188 ATCCCGATATAGGTCACCCAGTAGCGGT-CG-CAGACGTTTTTGATAAATGCCGCCTGGG 11131 Query 13187 CGCGAAAGTCCATCCCGCGCCACTGATGACGCTCCAGAATTCGGAACTTCCCGCCAGGTA 13246 | ||||||||| || || | || || |||||||| | ||||| || ||||| |||| Sbjct 11130 CCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTGCCGCCCGGTA 11071 Query 13247 CAGTTGGCGGTGCCATAACCACGCAGCCTGC-GCTGTCACCGTTCTGCGTACCTTTTGCC 13305 | ||||| || | ||||| ||||| | || |||||| | | || | Sbjct 11070 CCAGCGGCGGCGCAACCACCAC-CAGCCCGGAGCAATCACCGGTTTCCG---------CT 11021 Query 13306 GGGTCATAACCGATCCACACTTCGCGCCAGCCAAACGGGCGCAGCGCCAGCGCCTGAAAA 13365 ||||| || |||||||| || | || || ||||| |||| || | | || | Sbjct 11020 GGGTCGTAGCCGATCCATACCTGACGGTCACCGAACGGCCGCATGGCGAATGGCTTGTAG 10961 Query 13366 TCG---GTCCAGACTTCCCAGCTGTCCACCATGCACGCCTGCAGCT-CGCTGAGCGGGAA 13421 || | ||| | |||| ||||| |||||||| ||||||| ||| | ||| || Sbjct 10960 TCCTCTGCCCATTCAACCCAACTGTCGACCATGCAGCTCTGCAGCAACGCCAA-CGGAAA 10902 Query 13422 CACGGACGCGAGATCGTCCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCT 13481 | | || |||||| || ||||||||||||| |||||| | | | || ||||| Sbjct 10901 GATGCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCTCAGGGCT 10842 Query 13482 GTACTCCATGCGCAGCTGGTCGAGGTCGAACAGGTTACAGCCGCCGCGCACCGCATCCTC 13541 ||||||| |||| || || | ||||||||| | |||||||||| || | || ||| Sbjct 10841 GTACTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCGTGCTCTGCGTCCAG 10782 Query 13542 CACGGTGACGATCTGGCGGTACTGCCCGTCAGGGCAGAGCAGGCCGCGCGCAAGGTTGCT 13601 | |||||||||||| || || || ||| ||||| | | || | || | Sbjct 10781 GATGGTGACGATCTGCCGCCACAACCGGTCCTCGCAGAACCGCCCCTGTTGGAGCGCCCC 10722 Query 13602 GTGGGTCAGGTTAATATCCACCTT-GTCCGCTTTGGCACGG-----CCCCGGTTAAACAG 13655 ||||| || || ||||| || | | | | | | ||| ||| || | Sbjct 10721 GTGGG------AAACGTCGACCTTGGTGTGTTGCGCCGCTGGCTTACCCTTGTTGAAGCG 10668 Query 13656 CGCACCGGACCAGAACGGATAAGCACTGTGGGTCAGGCTGGAGGGCGTGGAAAAATAGGT 13715 | | |||| |||||| | || || |||| || |||||| ||||| || || ||||| Sbjct 10667 CTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAGTAGGT 10608 Query 13716 TTGTCGCCATTTTTTGTGAATGGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTT 13775 || ||||| || ||||| |||||||| || ||||| || ||| |||||||| || || Sbjct 10607 TTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCAAACTT 10548 Query 13776 TGGTATCCAGAAATATTCATCCAGGTACAGATTACCGTGATAGCTCTGCGCCGTGCGGGC 13835 ||||||| |||| || | ||| | ||| ||||| |||| ||| || || || || Sbjct 10547 GAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTACGCGC 10488 Query 13836 GTTGGTGCCGAGAAAGTACAAAGCGGCCCCATTGGGTAACACCATGGGATCGCCTTTCAG 13895 ||||| ||||| || ||| |||| || ||||| || || |||||||| || |||| Sbjct 10487 ATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCCGTCAG 10428 Query 13896 CTCAACATC---CACCTCTTTTGCAAAGTCGATGATGTACTGCTTAAAGACGTGCGCCTG 13952 ||| ||| | ||||| ||||| | ||||||| ||| | | || || Sbjct 10427 CTCGACACCGATAACCTCACGGGCAAATGCCTGGATGTACCCGCGAAACAGATAGGCTTG 10368 Query 13953 TGCCTTACTGGCAGAAAGGAAAATCTGGTTGCGTCCGGTCAGCAGGGCGTCAATCAATGC 14012 || || || ||||| ||||| ||||| ||||| ||| || |||| || || Sbjct 10367 GTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAGAAACGC 10308 Query 14013 TTCACGGGCAAAATAAAACGTGGCGCCAATCTGGCGCGACTTGAGCAGGTTGCGGATGCG 14072 || |||||||| ||| | || ||||| ||||| || ||||| | | ||| | || Sbjct 10307 CTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATGACGCGAGTCCG 10248 Query 14073 GTTTGTTTTCCCGGCTTCAAACCAGTGACGCTGATAGTCGAACATAGAGGCGTGG---AA 14129 ||| || || || |||||| ||| |||||||| | || ||| | || Sbjct 10247 --TTG-ATTGCCAGCCCGGTACCAGTCTTTCTGGTAGTCGAA---ACAGCCGTCGATAAA 10194 Query 14130 GACTTCTTCCAGCTTTTCGATCTGTTCATCAGTGAAAACATTCTTTTCCGGCTGACGGCG 14189 |||| || | |||||||| || || ||| | | || ||| | || Sbjct 10193 CGCTTCACGCAACAGCTCGATCTGCTCTTCGCTGATATCGTTTTTTGGGGTCTTTTTCTT 10134 Query 14190 TGGGCCTTTGTTGCGGTTGGCGACGTTAGGGTTTAAGTCGGCTTCGTTGCCACCATTGTT 14249 || || | |||||| || || | ||||||||| | |||| |||| | || || | Sbjct 10133 CGGACCCTCGTTGCGTTTAGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACCGCCGCCCTG 10074 Query 14250 AAACTTGCCG-ATCCGCGCGTGGCGCTCCGACTGGCGCGCCAGCAGGTCAATTTCTTTGA 14308 ||| || | || | || ||||| ||| | ||||| |||||| |||||||| |||| Sbjct 10073 AAA-GCGCTGAATTCTGGCCTGGCGTTCCAATTGGCGGTGCAGCAGATCAATTTCCTTGA 10015 Query 14309 AATC 14312 | || Sbjct 10014 AGTC 10011 Score = 242 bits (268), Expect = 8e-60 Identities = 622/927 (67%), Gaps = 60/927 (6%) Strand=Plus/Minus Query 15653 CAGACGCTGGAAGACCAGATCCAGCAGTCCGCCGCTTTCCTGA-CGCTGATTAACATC-A 15710 || || |||||| ||| ||| ||| ||||| ||| ||| ||| || |||||| | Sbjct 8642 CAAACCCTGGAAAACCGGATGCAGGAGTCCAGTCAGTTCTTGAGCGCC-ATCAACATCTA 8584 Query 15711 CGCCGGTCACTGAACAGTCAGGACAGTTGCTGGGGCTGGGCGTTGGCAGCACCATTGCCG 15770 || || || | || ||| || || | || ||||| | ||| | | | |||| Sbjct 8583 CGGCG-TCGCCGAGCAGATGGGCGAGAAAATTGGCATGGGCATCGGCGGGCCGAACGCCG 8525 Query 15771 GAACCACCGATACCACCACCAAAGAGCGCGAGCCTACCGA--TCCG-ACGCTGATGGAAG 15827 | ||||| ||||| | |||||||||||||| | | ||| || | || || || | Sbjct 8524 GCACCACTGATACAAATACCAAAGAGCGCGAAACCAGCGACATCAGCACACTC---GATG 8468 Query 15828 AC-GTGGAATACAAATGCGAACAGACCAACTTTGATACGGTGCTGACCTACGCAAAACTG 15886 || |||| ||| ||| ||||||||||| ||||| || ||| || || Sbjct 8467 ACCGTGGC-TACTTCTGCTCGCAGACCAACTTCGATACCCACCTCCGTTACAGCAAGTTG 8409 Query 15887 GACCTGTGGGCCAAGTTCCAGGACTTCCAGGTGCGTATCCGCAACGCCATCGTCAAGCGT 15946 || |||||||||||||| |||||||||| ||||| || |||||||| | || || Sbjct 8408 GATGCGTGGGCCAAGTTCCCCGACTTCCAGGCCCGTATTCGTGACGCCATCCTGAAACGC 8349 Query 15947 CAGGCGCTGGACCGCATCATGATCGGCTTTAACGGCGTGAAGCGCGCCAAAACCTCAAAT 16006 |||||||||||||||||| ||||||| | |||||||| | |||||| || || || Sbjct 8348 CAGGCGCTGGACCGCATCCTGATCGGTTGGAACGGCGTCAGTCGCGCCGCGACGTCCAAC 8289 Query 16007 CGTGCTGAAAACCCGCTGCTGCAGGACGTCAATAAAGGCTGGTTACAGAAAATCCGCG-- 16064 | || || || || | ||||||||||| | || ||| | ||||| || |||| Sbjct 8288 CCAGCCACCAATCCACTTCGCCAGGACGTCAACATTGGTTGGCTGCAGAAGATGCGCGCC 8229 Query 16065 -AAGACGCG--CCGGATCATGTTATGGGCAGCACCACAAAAGACGGTGCAACGACTGCAG 16121 || |||| ||| ||||| | || ||| ||| ||| || Sbjct 8228 GAAAACGCCGCCCGCGTCATG--AAGG------------AAGT-GGT----CGA----AG 8192 Query 16122 GCGCGGTCAAAGTGGGCAAGGGCGGCG------ACTATGCCAACCTGGACGCCGTGGTGA 16175 || | | |||| | || || | || ||| ||||||| |||||| |||| Sbjct 8191 GCTCCGGCAAAATCACCATCGGTGCCGGTAAAGACTTCACCAACCTCGACGCCCTGGTAT 8132 Query 16176 T--GGATGCCGTCAACGAGCTGATCGACGCGGTT-TATCAGGATGATGACGATCTGGTTG 16232 | | ||| || | ||| | || | ||| || || ||||| || |||||||| | Sbjct 8131 TCAGCATG--GTGGAAGAGTTCATTG-CGCCGTGGTACCAGGAAGACCCTGATCTGGTGG 8075 Query 16233 TTGTCTGCGGACGTGAACTGCTGTCTGACAAGTATTTCCCGCTGGTCAACAAAGAGCAGG 16292 | ||||||| || |||||||| | ||||||||||||||| | |||||||||| | | Sbjct 8074 TGATCTGCGGTCGCCAACTGCTGGCCGACAAGTATTTCCCGATCATCAACAAAGACAACG 8015 Query 16293 ACAACAGCGA--GAAAA--TTGCCGCCGATCTGATCATCAGCCAGAAACGTATGGGCGGC 16348 | ||| |||| | ||||||||| | ||| ||| || || || ||||| Sbjct 8014 ----CGCCGACTGAAATGCTGGCCGCCGATATCGTCACCAGTCAAAAGCGCTTGGGCAAT 7959 Query 16349 CTGCAGGCCGTGCGTGCGCCTTATTTCCCGGCAAATGCCCTGCTGATCACCCGTCTGGAT 16408 ||| |||||||| | |||||| |||||| | | ||||| ||||| ||||| Sbjct 7958 TTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGGTTGCTGGTCACCAAGCTGGAA 7899 Query 16409 AACCTGTCCATCTACTGGCAGGAAGATACCCGCCGCCGTTCTGTTATCGACAACCCGAAA 16468 |||||||| |||||||||||||||| | ||||||||| | || ||||||| | || Sbjct 7898 AACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGCACCGTCGTCGACAATGCCAAG 7839 Query 16469 CGTGACCGGATTGAAAACTTTGAGTCCGTCAACGAGGCGTATGTGGTCGAGGACTACCGC 16528 |||||||| || ||||||| ||||| ||||| || || || || | || ||| Sbjct 7838 CGTGACCGCATCGAAAACTACGAGTCGGTCAATGACGCATACGTCATTGAAGACCTGGAA 7779 Query 16529 TGCGCGGCGCTGGTAGAAAACATCGAA 16555 || || |||| | |||||||||||| Sbjct 7778 TGTGCCTCGCTCGCTGAAAACATCGAA 7752 Score = 149 bits (164), Expect = 1e-31 Identities = 295/431 (68%), Gaps = 12/431 (3%) Strand=Plus/Minus Query 11873 CCAAACCCCCCAACATTACTCGGCATAATCCCCATCATCTGCGGCGGAACGCGGTGTGCT 11932 ||||| ||||| | || ||||| ||| ||||||| |||||| |||| || ||| Sbjct 12423 CCAAAGCCCCCCGCGTTCTGCGGCACAATGCCCATCAGCTGCGGTGGAATACGCAA-GCT 12365 Query 11933 GCC-ATCATGTCATCGCGGCTCACGTTCTTGAT---GTTCAAAAACTCATCCTTAGCTGC 11988 | | | || || || ||| | ||| ||||| ||| || |||||||| || || Sbjct 12364 GGCTAGCACATCGTCACGGGTTTGGTTTTTGATCGAGTTGAAT---TCATCCTTGGCCGC 12308 Query 11989 AACCTCCGAAAGTGGAATGATTTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAA 12048 ||||| | || || | || || |||||||| || ||| ||||||| |||| ||| Sbjct 12307 CACCTCACTGACCGGGATCAGCTGTATCCCGTCCTTCTTGCCGGTGGGCGAATACACAAA 12248 Query 12049 CAGGTTGCGGAAGTTGCCCGGCCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCAC 12108 || |||||| || ||||| ||||| |||| | || | |||| ||| | || | Sbjct 12247 CAAGTTGCGAAAATTGCCTGGCCCCTTGGAGTCCTTGAGAGCCTTGCGCAAAGCGTCGAT 12188 Query 12109 GTCCTCCTGGTTCTGCGCGGCGTCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTT 12168 || | |||| ||||| || |||||||| | |||||||| ||||| || || || Sbjct 12187 ATCGGTTTCAGTCTGTGCGGCATCGGTCATGTAGAGAATGAAGCCGGCGTGACTGCCATT 12128 Query 12169 AATGTAGTACTTCCGGCGGAACAGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGC 12228 ||||||||| |||||||||| || || || || || |||| || || | | || Sbjct 12127 CTCGTAGTACTTGCGGCGGAACAACGTGGCCGATTCGTTGAGCAACGCCGACTGCAAGGC 12068 Query 12229 TGACAGAT--ATTCCGGCAGACCGTAAATCTCCTGGTTTAAATCCGGCTCCATCAGGTGA 12286 || || | ||||||| || ||||||||||||| ||||||| || ||| ||| Sbjct 12067 --ACTAATCCACTCCGGCAAGCCATAAATCTCCTGGTGCAAATCCGCTTCTCGCAGATGA 12010 Query 12287 AAGATGCTGCC 12297 || || || || Sbjct 12009 AAAATACTTCC 11999 Score = 109 bits (120), Expect = 1e-19 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 18982 ATCGAGGAACTGAAACGTGAAAACGAGGATTTGCGCCGCTGGGCTGACGCTCCTTTGCCT 19041 || ||||||||||||||||||||||| || ||||| |||||||| ||||||||| Sbjct 4286 ATAGAGGAACTGAAACGTGAAAACGATGACCTGCGCAAATGGGCTGATCAGCCTTTGCCT 4227 Query 19042 GCTGACATTATCCGGCTGCGGGAGCGTCCGGCCCTCGCCGGAGGTGCAGCTTACCGTGAG 19101 | | | ||||||||| || || || |||||| | || | ||||||||||||| Sbjct 4226 GACGCTGCTCGCCGGCTGCGCGATCGCCCCGCCCTCACTGGCGCCTCAGCTTACCGTGAC 4167 Query 19102 TGGCTGTCCCAGAGTGACGCAGTGCCGCTTGGACAGG---TCAGCGCCGCGCAGTAACGG 19158 ||||||||| ||| || ||| | || || || |||| |||||||||||||| Sbjct 4166 TGGCTGTCCGGCCGTGGTGCCGTGTCAGTT--ACCGGCGACCAGC-CCGCGCAGTAACGG 4110 Query 19159 CGATC 19163 ||||| Sbjct 4109 CGATC 4105 >seq3084702 Length=3045 Score = 114 bits (126), Expect = 3e-21 Identities = 207/296 (70%), Gaps = 10/296 (3%) Strand=Plus/Minus Query 22985 ACCTGCCCGATCAGATTCCTGCCTTATCTGGCCTGGGCGTTTTCTGTTGACCGCTGGGAT 23044 ||||||||| | || ||||| ||||||||||||| | || || || ||||||||| Sbjct 2889 ACCTGCCCGGTGCATTTGCTGCCGCATCTGGCCTGGGCTTGGTCGGTGGATCGCTGGGAT 2830 Query 23045 GAGAGCTGGACAGAAAGCG-TCAAGCGCCGCGTTGTGCAGGACGCTTTTTATATCCATCA 23103 | | ||||||| | ||| |||||| || | ||| | ||| ||| |||||| Sbjct 2829 TACCGATGGACAG-AGGCGACCAAGCGTGCCGCCATCAAGGCCTCTTATTACATCCATGC 2771 Query 23104 GCACAAGGGGACAACCCGCGCCGTGCGGCGCGTGGTGGAGCCGTTCGGCTTCCTGATCCG 23163 |||||||| || | | ||||| |||| || ||||| ||||| | |||| |||||| Sbjct 2770 CCACAAGGGAACTATCGGCGCCTTGCGTCGTGTGGTTGAGCCTCTGGGCTACCTGATTGA 2711 Query 23164 CATCATTGAGTGGT----GGC--AGACCGGCGAAACGCC-GGGAACGTTCCGTCTGGATA 23216 ||||| ||||||| || | ||| | ||||| |||| || ||| || | Sbjct 2710 AATCATCGAGTGGTTTAACGCTGTGCCCGAGGGCACGCCAGGGACATTTGCGT-TGAAGG 2652 Query 23217 TTGGCGTACAGGATCATGGTATCACCGAAGACACCTATCTGGAGCTTGAGCGCCTG 23272 ||||||| ||| |||||||||||||| | |||| |||||| ||||| ||| Sbjct 2651 TTGGCGTGAGTGATTCCGGTATCACCGAAGAGATGTATCAGGAGCTGGAGCGGCTG 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105053172077978