Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq367944 178 2e-39
seq2951856 134 2e-26
seq28392 118 2e-21
seq20229 95.1 2e-14
seq359217 93.3 8e-14
>seq367944
Length=8143
Score = 178 bits (196), Expect = 2e-39
Identities = 185/243 (76%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| | || ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 649 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 708
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || |||||||| || ||||| || | |||||| ||||||
Sbjct 709 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCCGCCTTGAGTGTCTTCACC 768
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 769 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 828
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| ||
Sbjct 829 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 888
Query 241625 GAC 241627
|||
Sbjct 889 GAC 891
Score = 89.7 bits (98), Expect = 9e-13
Identities = 88/115 (77%), Gaps = 8/115 (7%)
Strand=Plus/Plus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | || || |||||||| |||||||
Sbjct 686 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 745
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 746 TCTCCGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 800
>seq2951856
Length=451
Score = 134 bits (148), Expect = 2e-26
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 104 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAG- 162
Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532
|| ||| || | || ||||| ||||||||||||||| || |||| |||||| ||||
Sbjct 163 -CTCCGTGTTCTGGCTCATGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 221
Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592
| |||||| |||||| |||| ||| || | |||||| || || | ||| || || ||||
Sbjct 222 GCTTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGACGCTTGCGCTCTGCCT 281
Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
| ||||| || || ||||||||||| || |||
Sbjct 282 TAATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 316
>seq28392
Length=738
Score = 118 bits (130), Expect = 2e-21
Identities = 273/405 (67%), Gaps = 15/405 (4%)
Strand=Plus/Plus
Query 47864 AAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTG 47923
|||||||| ||||||||||||| || || || ||||| ||| || || || | |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT--TCTA 58
Query 47924 TTATACAC-CCGTG-TCAGGCCCATCTGTTCCAGCAGGTG---ATCCGCGACGTACTCGA 47978
| | || || || | | ||||| || |||||| | ||| || ||| ||||||
Sbjct 59 CTCTGCAAACCTTGCTAAAGCCCAGCT---CCAGCATAAGTCTATCTGCCACGAACTCGA 115
Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038
|||| | ||| | ||| ||||| || ||||| ||| |||| |||| ||||
Sbjct 116 TGTACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGA 175
Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG 48098
| ||||||| |||||| || || | | | || | || || | || || |
Sbjct 176 GGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAG 235
Query 48099 GTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157
|||||| |||||| ||| |||| | |||||||||||| | |||||| || ||
Sbjct 236 GTTTGTGCAACAGGTGTTTGAACATA----AGGCAGGCAAAGTCACAGTGCAAACCCTCA 291
Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217
|| | ||| || || | |||| || ||| |||||||| | || | | ||||||
Sbjct 292 TCTCTGCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGC 351
Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262
||||| || | ||| ||||| || || ||||||||||| ||||||
Sbjct 352 CAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq20229
Length=11930
Score = 95.1 bits (104), Expect = 2e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||||| || || |||||||||||||||||| |||||| |||| |||||| |||
Sbjct 4841 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 4900
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 4901 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 4959
Query 213647 GGAC 213650
|||
Sbjct 4960 AGAC 4963
>seq359217
Length=6922
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||||||||| | ||||| || | ||||| |||| |||
Sbjct 2074 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2015
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | || |||||||| || |||||| ||||||||||
Sbjct 2014 GCGATGCGGTTCCTCATGCGCTTCCTCTCAGCCTTGATCCGCTCCTGGGACTCCATGTCG 1955
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 1954 ATGGGGGAC 1946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 895569683754240
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