Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq367944 178 2e-39 seq2951856 134 2e-26 seq28392 118 2e-21 seq20229 95.1 2e-14 seq359217 93.3 8e-14 >seq367944 Length=8143 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 649 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 708 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || |||||||| || ||||| || | |||||| |||||| Sbjct 709 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCCGCCTTGAGTGTCTTCACC 768 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 769 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 828 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 829 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 888 Query 241625 GAC 241627 ||| Sbjct 889 GAC 891 Score = 89.7 bits (98), Expect = 9e-13 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || |||||||| ||||||| Sbjct 686 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 745 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 746 TCTCCGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 800 >seq2951856 Length=451 Score = 134 bits (148), Expect = 2e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 104 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAG- 162 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || ||||| ||||||||||||||| || |||| |||||| |||| Sbjct 163 -CTCCGTGTTCTGGCTCATGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCA 221 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | |||||| |||||| |||| ||| || | |||||| || || | ||| || || |||| Sbjct 222 GCTTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGACGCTTGCGCTCTGCCT 281 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | ||||| || || ||||||||||| || ||| Sbjct 282 TAATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 316 >seq28392 Length=738 Score = 118 bits (130), Expect = 2e-21 Identities = 273/405 (67%), Gaps = 15/405 (4%) Strand=Plus/Plus Query 47864 AAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTG 47923 |||||||| ||||||||||||| || || || ||||| ||| || || || | | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT--TCTA 58 Query 47924 TTATACAC-CCGTG-TCAGGCCCATCTGTTCCAGCAGGTG---ATCCGCGACGTACTCGA 47978 | | || || || | | ||||| || |||||| | ||| || ||| |||||| Sbjct 59 CTCTGCAAACCTTGCTAAAGCCCAGCT---CCAGCATAAGTCTATCTGCCACGAACTCGA 115 Query 47979 TGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGA 48038 |||| | ||| | ||| ||||| || ||||| ||| |||| |||| |||| Sbjct 116 TGTACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGA 175 Query 48039 GAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGG 48098 | ||||||| |||||| || || | | | || | || || | || || | Sbjct 176 GGAACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAG 235 Query 48099 GTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 |||||| |||||| ||| |||| | |||||||||||| | |||||| || || Sbjct 236 GTTTGTGCAACAGGTGTTTGAACATA----AGGCAGGCAAAGTCACAGTGCAAACCCTCA 291 Query 48158 TCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGC 48217 || | ||| || || | |||| || ||| |||||||| | || | | |||||| Sbjct 292 TCTCTGCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGC 351 Query 48218 CAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262 ||||| || | ||| ||||| || || ||||||||||| |||||| Sbjct 352 CAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq20229 Length=11930 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || |||||||||||||||||| |||||| |||| |||||| ||| Sbjct 4841 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 4900 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 4901 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 4959 Query 213647 GGAC 213650 ||| Sbjct 4960 AGAC 4963 >seq359217 Length=6922 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | ||||| || | ||||| |||| ||| Sbjct 2074 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2015 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 2014 GCGATGCGGTTCCTCATGCGCTTCCTCTCAGCCTTGATCCGCTCCTGGGACTCCATGTCG 1955 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 1954 ATGGGGGAC 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895569683754240