Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq142543 102 1e-16 seq28392 93.3 8e-14 >seq142543 Length=7870 Score = 102 bits (112), Expect = 1e-16 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| ||| || ||||| || || | Sbjct 6895 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCTGCTATAT 6836 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| ||||||||| || |||||||| |||||||||||| Sbjct 6835 TCTGGCTAAAGAA-AAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGC 6777 Query 25999 AGGGACGA 26006 || || || Sbjct 6776 AGAGATGA 6769 >seq28392 Length=738 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 25900 GTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGG 25959 ||||| |||||||| || |||||| |||||| | || |||||||||||| | | | || Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAA-ACGAGG 337 Query 25960 ACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAG 26018 || ||||| || || ||||||| || || || ||||| || |||||| | ||| | Sbjct 336 ACTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTG 277 Query 26019 AGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 || ||||||||||| | | || ||| || | ||||||||||| || ||| Sbjct 276 TGACTTTGCCTGCCTTATGTTCA---AACACCTGTTGCACAAACCTTCGGAACAGA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892985457723840