Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq142543 102 1e-16
seq28392 93.3 8e-14
>seq142543
Length=7870
Score = 102 bits (112), Expect = 1e-16
Identities = 101/128 (79%), Gaps = 2/128 (2%)
Strand=Plus/Minus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| |||| |||||||||||||| || || || || ||| ||| || ||||| || || |
Sbjct 6895 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCTGCTATAT 6836
Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998
||||||| ||| | ||| |||| ||||||||| || |||||||| ||||||||||||
Sbjct 6835 TCTGGCTAAAGAA-AAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGC 6777
Query 25999 AGGGACGA 26006
|| || ||
Sbjct 6776 AGAGATGA 6769
>seq28392
Length=738
Score = 93.3 bits (102), Expect = 8e-14
Identities = 128/176 (73%), Gaps = 5/176 (3%)
Strand=Plus/Minus
Query 25900 GTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGG 25959
||||| |||||||| || |||||| |||||| | || |||||||||||| | | | ||
Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAA-ACGAGG 337
Query 25960 ACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAG 26018
|| ||||| || || ||||||| || || || ||||| || |||||| | ||| |
Sbjct 336 ACTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTG 277
Query 26019 AGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074
|| ||||||||||| | | || ||| || | ||||||||||| || |||
Sbjct 276 TGACTTTGCCTGCCTTATGTTCA---AACACCTGTTGCACAAACCTTCGGAACAGA 224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 892985457723840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |