Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019518.1 Length=44485 Score E Sequences producing significant alignments: (Bits) Value seq3087968 176 1e-39 seq108461 120 8e-23 >seq3087968 Length=6546 Score = 176 bits (194), Expect = 1e-39 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10464 GGTTGTGTTATTGGACCCGTCCGCACAGTCGCTTGGCGCGTCCTCGATGCCCAATATTTC 10523 |||||||| ||||||| | ||| |||| ||||| ||||| || |||||||||||| Sbjct 1 GGTTGTGTGTATGGACCCAAAAGAACAATCGCGTGGCGGGTCCTGGACGCCCAATATTTC 60 Query 10524 GGACTGGCCCAACGACGCAAGCGTGTGTTTGTTGTCGCAAGTGCTCGAAAAGGATTTGAT 10583 || ||||||||||||||| |||||||| |||||||||||||||||| | || || ||| Sbjct 61 GGCCTGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGAT 120 Query 10584 CCCGCAGAAGTATTATTTGAGCGCGAAGGCGTGCGAAGGGATTCTCCGCCGAGCCGAGAA 10643 || | || ||| | ||||||||||||||| |||| ||||| || ||||| |||||| Sbjct 121 CCAACCGAGGTACTTTTTGAGCGCGAAGGCTTGCGCCGGGATACTGCGCCGCGCCGAGGC 180 Query 10644 GCGTTGCAAGAAGCTGCCGGAA 10665 | | |||||| | | |||||| Sbjct 181 GAGGGGCAAGACGTTACCGGAA 202 >seq108461 Length=6150 Score = 120 bits (132), Expect = 8e-23 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 10528 TGGCCCAACGACGCAAGCGTGTGTTTGTTGTCGCAAGTGCTCGAAAAGGATTTGATCCCG 10587 |||||||||||||| |||||||| |||||||||||||||||| | || || |||||| Sbjct 185 TGGCCCAACGACGCCGTCGTGTGTTCGTTGTCGCAAGTGCTCGAGACGGGTTCGATCCCA 244 Query 10588 CAGAAGTATTATTTGAGCGCGAAGGCGTGCGAAGGGATTCTCCGCCGAGCCGAG 10641 ||| ||| | |||||||| ||||||||||| ||||| || ||||| |||||| Sbjct 245 CAGCGGTACTTTTTGAGCGAGAAGGCGTGCGCCGGGATACTGCGCCGCGCCGAG 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137013948160154