Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019522.1
Length=48454
Score E
Sequences producing significant alignments: (Bits) Value
seq3031070 235 2e-57
seq289766 150 5e-32
seq3088211 131 5e-26
seq3048559 131 5e-26
seq277625 102 2e-17
seq2563683 100 8e-17
seq2559636 100 8e-17
>seq3031070
Length=905
Score = 235 bits (260), Expect = 2e-57
Identities = 508/758 (67%), Gaps = 5/758 (1%)
Strand=Plus/Minus
Query 22806 CGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAATGGTTCGGGAGA 22865
|| || || || ||||| || | | ||||| || ||||||| ||| ||||||||
Sbjct 897 CGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCGAC 838
Query 22866 ATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCTCCGACTTGGAT 22925
| || || ||||| ||||| ||||| || ||||| ||||| ||||| |||| | ||
Sbjct 837 GTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTGAG 778
Query 22926 TTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTGATGAATTCGGT 22985
|||||||| ||| | ||||| ||||| || ||| | || || || || | | || |
Sbjct 777 TTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAGTACGCT 718
Query 22986 GCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCGGTCACGATGTT 23045
|| ||| | | || || | ||| | | || ||| || ||||| |||
Sbjct 717 CAACCAGCATTCACCCAAGACGGCGCA---CCGAAGATCAAGCTGCAGGGCCACGACGTT 661
Query 23046 GAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACGTGCAGGAAATGGTT 23105
|| || ||||| || ||||| ||||| || |||||||||| |||||| || | ||||
Sbjct 660 GAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTG 601
Query 23106 GATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATGTGGCGAGGGCATGCGGAACG 23165
|| || ||||||| | | || |||| | | | | ||||||| ||||||||
Sbjct 600 GACGCTGCAAACAGTCCTGCTGAGGTGGGGAAATTGAACATATCGAGGGCCTGCGGAACC 541
Query 23166 TGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGACGAGTGGTGATTTATGGCGG 23225
|| | | || | ||| ||| |||| ||| | ||| |||| || | ||||| |
Sbjct 540 TGTCTGCTCAAGTCGGCCTGA--TTTTAGACAGGTTAAGACGGATGATCGCCAATGGCAG 483
Query 23226 TACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGCCTGCTTTGATACCCCAT 23285
|| | | | || || | || ||||||||| | | || |||||||| || || |
Sbjct 482 CTCTTCGAAGTGAGGTGAAAGCCTTTATTGTTCAGGCTCTCGCGTGCTTTGACACACCTT 423
Query 23286 CTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCGATTACTCGGCAGCAGGTTG 23345
|||||||||| || || ||| ||||||||| | ||| | ||||| |||||| |
Sbjct 422 CTCAGGTGGTTGAGGCGGTCTTAAAAGAATTCAACGTTGTTGTCACTCGTCAGCAGTGCG 363
Query 23346 AATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGCTCAAAAGTGGGTGGATATAT 23405
|||| || ||||| ||||||||| |||| || | ||| | ||||||| || |
Sbjct 362 AATCACACGACCCAACAAAGGCAGCCGGTAAGGCGCTGGGCGAGAAGTGGGCAACGATGT 303
Query 23406 TCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGACATCCCCATAGCCAATAAAG 23465
|| | || |||| |||| | || | |||||||| || |||||| ||
Sbjct 302 TCCGAGAGAGCCGCAAGCGGTTCCGCGAAGAGACTGAAGACATCCCGATCGCCAATCGAG 243
Query 23466 CCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGCCGAGAATATGAAAAACATGG 23525
||| || ||||||| ||| | ||| || | ||||| ||||| |||||||
Sbjct 242 CCTTCCGACTGCGCGCCCTGAGCCGCATGGCTGAGAAAGCCGAAGGCATGAAGAACATGG 183
Query 23526 GGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAG 23563
| | || || |||||||||||||||||||| ||||||
Sbjct 182 CGCTCACTGCCCAGCTACTGGAGCAGGCTGCCAAAGAG 145
>seq289766
Length=704
Score = 150 bits (166), Expect = 5e-32
Identities = 304/448 (68%), Gaps = 5/448 (1%)
Strand=Plus/Plus
Query 22721 GGCTGACATTGCGTTTATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTC 22779
||| ||||| | | ||||||||||| || ||| |||||||| | || || || || |
Sbjct 2 GGCAGACATCAGGGTCATGTGGGCGTCGTCGAGC-TTCGAGAAGCAGGGACGTACAGTCC 60
Query 22780 TTGGTCAATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAAC 22839
| || || |||| | || | | || || || |||||||||||| | | ||||| |
Sbjct 61 TGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGGATGGAGC 120
Query 22840 AGCAGATGCATGAATGGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACT 22899
| ||||||| ||| |||||||| | || || ||||| ||||| || || || |||
Sbjct 121 AACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCTGCGAACT 180
Query 22900 ATTGCGCGGAGTGCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACA 22959
| ||||| | || |||| | || |||||||||||| | || || |||||||| |||
Sbjct 181 ACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTTTATCACC 240
Query 22960 TTTGCCACGCTACTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGG 23019
| || || || || | | |||| || ||| | | || ||| |||
Sbjct 241 TGGCTCATGCGACCGACAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGA 297
Query 23020 TGCTGAAAATGCGCGGTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTG 23079
| | || ||| || ||||| || || || ||||| || ||||| |||||||||||||
Sbjct 298 AGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGCTACGGTG 357
Query 23080 CAAGCCGTGACGTGCAGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACG 23139
| || | ||||| || | |||| ||||| ||||||| | | || |||| |
Sbjct 358 CGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAAAT 417
Query 23140 TCGATGTGGCGAGGGCATGCGGAACGTG 23167
| | | |||||||| |||||||| ||
Sbjct 418 TGAACATTGCGAGGGCCTGCGGAACCTG 445
>seq3088211
Length=8104
Score = 131 bits (144), Expect = 5e-26
Identities = 196/276 (71%), Gaps = 2/276 (1%)
Strand=Plus/Minus
Query 22722 GCTGACATTGCGTTTATGTGGGCGTCATCAGCATTCGAGAAAAAAGGCCGGACGGTTCTT 22781
|| ||||| | ||||||||||||| || ||||||| | ||||| || |||||
Sbjct 1599 GCAGACATCCGGGTTATGTGGGCGTCGTCGTGCTTCGAGAGGCAGGGCCGCACAGTTCTG 1540
Query 22782 GGTCAATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAG 22841
|| ||| ||| | || | | || || || || ||||| ||| | | ||||| ||
Sbjct 1539 GGCCAAGCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAGGCCCGGATGGAGCAA 1480
Query 22842 CAGATGCATGAATGGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTAT 22901
||||||| ||||||||| || | || || ||||| ||||| |||||||||||||
Sbjct 1479 CAGATGCGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTAC 1420
Query 22902 TGCGCGGAGTGCTCCGACTTGGA-TTTCTGCGCGCTGGTAGAACATGAGCTTTACCACAT 22960
||||| | ||| ||| | || ||| |||| ||||| || |||||||| || |||||
Sbjct 1419 TGCGCCCAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCATGAGCTCTATCACAT 1361
Query 22961 TTGCCACGCTACTGATGAATTCGGTGCTCCGAAATT 22996
|| ||| || || ||| | | ||| || || || ||
Sbjct 1360 TTCCCAGGCGACAGATCAGTACGGAGCACCCAAGTT 1325
Score = 93.3 bits (102), Expect = 1e-14
Identities = 154/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 23149 CGAGGGCATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGACGA 23208
||||||| |||||||| || | | || | ||| ||| |||| ||| | || ||||
Sbjct 557 CGAGGGCCTGCGGAACCTGTCTGCTTAAGTCGGCCTGA--TTTTGGACAGGTTTGGACGG 500
Query 23209 GTGGTGATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGC 23268
|| |||||| | |||| | | || ||| | || | || ||| | | ||
Sbjct 499 ATGAACGCCTATGGCAGCTCTAAGCAGTGAGGTGAAGACCTTTGTAGTACAGGCTCTCGC 440
Query 23269 CTGCTTTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCG-A 23327
||||| ||||| || ||||||||||| || || ||| |||| |||||| || ||| | |
Sbjct 439 TTGCTTCGATACGCCTTCTCAGGTGGTTGAGGCGGTCCATAAGGAATTCAGC-TTGAGCA 381
Query 23328 TTACTCGGCAGCAGGTTGAATCTCATGACCCGACAAAGG 23366
| || || |||||||| ||||| || |||||||| ||||
Sbjct 380 TCACCCGTCAGCAGGTCGAATCCCACGACCCGACGAAGG 342
>seq3048559
Length=1123
Score = 131 bits (144), Expect = 5e-26
Identities = 169/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040
||||| || ||| | || ||||| || || || ||||||||||| ||||| | |||| |
Sbjct 382 GTCGGCAATCCATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATA 441
Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAAAAGCGCA 8100
||||| ||||||||||| || |||||||||||||| ||||| ||| |||||| | ||
Sbjct 442 GGTGAGTGCTGGCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCA 501
Query 8101 GTAAAGGCGCACATCACAGCATTAATAAAAATGGGCTTTCTGTCAAAAGAAAACAGGCTG 8160
|||| | |||||||| || | || ||||| || ||| |||| | | |
Sbjct 502 GTAATGAACCACATCACCGCCCTGTGTGAAGCCGGCTTGTTGCGAAAGGAAATCCGAAAG 561
Query 8161 GGTGAAAACAACGGGAAGGGGAACACGTCGAACGTTTACTATCTGACGCTGGAT 8214
|||| | || |||||| ||||||||||||||| ||||| ||||||
Sbjct 562 GGTG------GCCCTAAAGGGAACTCGTCGAACGTTTACTTCCTGACCCTGGAT 609
>seq277625
Length=52836
Score = 102 bits (112), Expect = 2e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 7941 TATGAGCATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAA 8000
|||||||||| | | |||| || ||||||| || ||||||||||| || |||||
Sbjct 40876 TATGAGCATGGATCTGATGGTCAAGGCCATGAAAACGAAGGTCGGTAACCCGCTCCGTAA 40817
Query 8001 GCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCGTCATA 8060
| ||||||| | ||| |||| || ||||| | ||| | || || ||||||||||| ||
Sbjct 40816 GTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGTA 40757
Query 8061 CCAGCATGTCGCTGATCAGTGTGA 8084
|||||| | || ||||| |||||
Sbjct 40756 CCAGCACATTGCCGATCAATGTGA 40733
>seq2563683
Length=175
Score = 100 bits (110), Expect = 8e-17
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040
|||||||| ||||| || ||||||||||| || ||| |||| || ||||| | |||
Sbjct 123 GTCGGTAATCCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTT 64
Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAA 8093
||||| ||||||||||| |||||||| |||| |||||||| || ||||||
Sbjct 63 GGTGAGTGCTGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAA 11
>seq2559636
Length=175
Score = 100 bits (110), Expect = 8e-17
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040
|||||||| || ||||| ||||||||||| || ||| |||| || ||||| | |||
Sbjct 123 GTCGGTAATCCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTC 64
Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAA 8093
||||| ||||||||||| |||||||| |||| |||||||| || ||||||
Sbjct 63 GGTGAGTGCTGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAA 11
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149248932754112
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