Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq3031070 235 2e-57 seq289766 150 5e-32 seq3088211 131 5e-26 seq3048559 131 5e-26 seq277625 102 2e-17 seq2563683 100 8e-17 seq2559636 100 8e-17 >seq3031070 Length=905 Score = 235 bits (260), Expect = 2e-57 Identities = 508/758 (67%), Gaps = 5/758 (1%) Strand=Plus/Minus Query 22806 CGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGAATGGTTCGGGAGA 22865 || || || || ||||| || | | ||||| || ||||||| ||| |||||||| Sbjct 897 CGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCGAC 838 Query 22866 ATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGTGCTCCGACTTGGAT 22925 | || || ||||| ||||| ||||| || ||||| ||||| ||||| |||| | || Sbjct 837 GTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTGAG 778 Query 22926 TTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTACTGATGAATTCGGT 22985 |||||||| ||| | ||||| ||||| || ||| | || || || || | | || | Sbjct 777 TTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAGTACGCT 718 Query 22986 GCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGCGCGGTCACGATGTT 23045 || ||| | | || || | ||| | | || ||| || ||||| ||| Sbjct 717 CAACCAGCATTCACCCAAGACGGCGCA---CCGAAGATCAAGCTGCAGGGCCACGACGTT 661 Query 23046 GAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACGTGCAGGAAATGGTT 23105 || || ||||| || ||||| ||||| || |||||||||| |||||| || | |||| Sbjct 660 GAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTG 601 Query 23106 GATGCGGCAAACAATAGGCCGGAAGTGGCTCACGTCGATGTGGCGAGGGCATGCGGAACG 23165 || || ||||||| | | || |||| | | | | ||||||| |||||||| Sbjct 600 GACGCTGCAAACAGTCCTGCTGAGGTGGGGAAATTGAACATATCGAGGGCCTGCGGAACC 541 Query 23166 TGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGACGAGTGGTGATTTATGGCGG 23225 || | | || | ||| ||| |||| ||| | ||| |||| || | ||||| | Sbjct 540 TGTCTGCTCAAGTCGGCCTGA--TTTTAGACAGGTTAAGACGGATGATCGCCAATGGCAG 483 Query 23226 TACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGCCTGCTTTGATACCCCAT 23285 || | | | || || | || ||||||||| | | || |||||||| || || | Sbjct 482 CTCTTCGAAGTGAGGTGAAAGCCTTTATTGTTCAGGCTCTCGCGTGCTTTGACACACCTT 423 Query 23286 CTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCGATTACTCGGCAGCAGGTTG 23345 |||||||||| || || ||| ||||||||| | ||| | ||||| |||||| | Sbjct 422 CTCAGGTGGTTGAGGCGGTCTTAAAAGAATTCAACGTTGTTGTCACTCGTCAGCAGTGCG 363 Query 23346 AATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGCTCAAAAGTGGGTGGATATAT 23405 |||| || ||||| ||||||||| |||| || | ||| | ||||||| || | Sbjct 362 AATCACACGACCCAACAAAGGCAGCCGGTAAGGCGCTGGGCGAGAAGTGGGCAACGATGT 303 Query 23406 TCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGACATCCCCATAGCCAATAAAG 23465 || | || |||| |||| | || | |||||||| || |||||| || Sbjct 302 TCCGAGAGAGCCGCAAGCGGTTCCGCGAAGAGACTGAAGACATCCCGATCGCCAATCGAG 243 Query 23466 CCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGCCGAGAATATGAAAAACATGG 23525 ||| || ||||||| ||| | ||| || | ||||| ||||| ||||||| Sbjct 242 CCTTCCGACTGCGCGCCCTGAGCCGCATGGCTGAGAAAGCCGAAGGCATGAAGAACATGG 183 Query 23526 GGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAG 23563 | | || || |||||||||||||||||||| |||||| Sbjct 182 CGCTCACTGCCCAGCTACTGGAGCAGGCTGCCAAAGAG 145 >seq289766 Length=704 Score = 150 bits (166), Expect = 5e-32 Identities = 304/448 (68%), Gaps = 5/448 (1%) Strand=Plus/Plus Query 22721 GGCTGACATTGCGTTTATGTGGGCGTCATC-AGCATTCGAGAAAAAAGGCCGGACGGTTC 22779 ||| ||||| | | ||||||||||| || ||| |||||||| | || || || || | Sbjct 2 GGCAGACATCAGGGTCATGTGGGCGTCGTCGAGC-TTCGAGAAGCAGGGACGTACAGTCC 60 Query 22780 TTGGTCAATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAAC 22839 | || || |||| | || | | || || || |||||||||||| | | ||||| | Sbjct 61 TGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGGATGGAGC 120 Query 22840 AGCAGATGCATGAATGGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACT 22899 | ||||||| ||| |||||||| | || || ||||| ||||| || || || ||| Sbjct 121 AACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCTGCGAACT 180 Query 22900 ATTGCGCGGAGTGCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACA 22959 | ||||| | || |||| | || |||||||||||| | || || |||||||| ||| Sbjct 181 ACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTTTATCACC 240 Query 22960 TTTGCCACGCTACTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGG 23019 | || || || || | | |||| || ||| | | || ||| ||| Sbjct 241 TGGCTCATGCGACCGACAAGTACGGTCAACCAGCATTCACCCAAGA---CGGTGCACCGA 297 Query 23020 TGCTGAAAATGCGCGGTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTG 23079 | | || ||| || ||||| || || || ||||| || ||||| ||||||||||||| Sbjct 298 AGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGCTACGGTG 357 Query 23080 CAAGCCGTGACGTGCAGGAAATGGTTGATGCGGCAAACAATAGGCCGGAAGTGGCTCACG 23139 | || | ||||| || | |||| ||||| ||||||| | | || |||| | Sbjct 358 CGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTGGGGAAAT 417 Query 23140 TCGATGTGGCGAGGGCATGCGGAACGTG 23167 | | | |||||||| |||||||| || Sbjct 418 TGAACATTGCGAGGGCCTGCGGAACCTG 445 >seq3088211 Length=8104 Score = 131 bits (144), Expect = 5e-26 Identities = 196/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 22722 GCTGACATTGCGTTTATGTGGGCGTCATCAGCATTCGAGAAAAAAGGCCGGACGGTTCTT 22781 || ||||| | ||||||||||||| || ||||||| | ||||| || ||||| Sbjct 1599 GCAGACATCCGGGTTATGTGGGCGTCGTCGTGCTTCGAGAGGCAGGGCCGCACAGTTCTG 1540 Query 22782 GGTCAATGCGAAGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAG 22841 || ||| ||| | || | | || || || || ||||| ||| | | ||||| || Sbjct 1539 GGCCAAGCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAGGCCCGGATGGAGCAA 1480 Query 22842 CAGATGCATGAATGGTTCGGGAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTAT 22901 ||||||| ||||||||| || | || || ||||| ||||| ||||||||||||| Sbjct 1479 CAGATGCGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACCTTGGCCGCTGACTAC 1420 Query 22902 TGCGCGGAGTGCTCCGACTTGGA-TTTCTGCGCGCTGGTAGAACATGAGCTTTACCACAT 22960 ||||| | ||| ||| | || ||| |||| ||||| || |||||||| || ||||| Sbjct 1419 TGCGCCCAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCATGAGCTCTATCACAT 1361 Query 22961 TTGCCACGCTACTGATGAATTCGGTGCTCCGAAATT 22996 || ||| || || ||| | | ||| || || || || Sbjct 1360 TTCCCAGGCGACAGATCAGTACGGAGCACCCAAGTT 1325 Score = 93.3 bits (102), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 23149 CGAGGGCATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGACGA 23208 ||||||| |||||||| || | | || | ||| ||| |||| ||| | || |||| Sbjct 557 CGAGGGCCTGCGGAACCTGTCTGCTTAAGTCGGCCTGA--TTTTGGACAGGTTTGGACGG 500 Query 23209 GTGGTGATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGC 23268 || |||||| | |||| | | || ||| | || | || ||| | | || Sbjct 499 ATGAACGCCTATGGCAGCTCTAAGCAGTGAGGTGAAGACCTTTGTAGTACAGGCTCTCGC 440 Query 23269 CTGCTTTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCG-A 23327 ||||| ||||| || ||||||||||| || || ||| |||| |||||| || ||| | | Sbjct 439 TTGCTTCGATACGCCTTCTCAGGTGGTTGAGGCGGTCCATAAGGAATTCAGC-TTGAGCA 381 Query 23328 TTACTCGGCAGCAGGTTGAATCTCATGACCCGACAAAGG 23366 | || || |||||||| ||||| || |||||||| |||| Sbjct 380 TCACCCGTCAGCAGGTCGAATCCCACGACCCGACGAAGG 342 >seq3048559 Length=1123 Score = 131 bits (144), Expect = 5e-26 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040 ||||| || ||| | || ||||| || || || ||||||||||| ||||| | |||| | Sbjct 382 GTCGGCAATCCATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATA 441 Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAAAAGCGCA 8100 ||||| ||||||||||| || |||||||||||||| ||||| ||| |||||| | || Sbjct 442 GGTGAGTGCTGGCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCA 501 Query 8101 GTAAAGGCGCACATCACAGCATTAATAAAAATGGGCTTTCTGTCAAAAGAAAACAGGCTG 8160 |||| | |||||||| || | || ||||| || ||| |||| | | | Sbjct 502 GTAATGAACCACATCACCGCCCTGTGTGAAGCCGGCTTGTTGCGAAAGGAAATCCGAAAG 561 Query 8161 GGTGAAAACAACGGGAAGGGGAACACGTCGAACGTTTACTATCTGACGCTGGAT 8214 |||| | || |||||| ||||||||||||||| ||||| |||||| Sbjct 562 GGTG------GCCCTAAAGGGAACTCGTCGAACGTTTACTTCCTGACCCTGGAT 609 >seq277625 Length=52836 Score = 102 bits (112), Expect = 2e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 7941 TATGAGCATGAACTTAATGGCGAAAGCCATGAGCCGAAAAGTCGGTAACCCACTACGTAA 8000 |||||||||| | | |||| || ||||||| || ||||||||||| || ||||| Sbjct 40876 TATGAGCATGGATCTGATGGTCAAGGCCATGAAAACGAAGGTCGGTAACCCGCTCCGTAA 40817 Query 8001 GCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAAGGTGAATGCTGGCCGTCATA 8060 | ||||||| | ||| |||| || ||||| | ||| | || || ||||||||||| || Sbjct 40816 GTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGTA 40757 Query 8061 CCAGCATGTCGCTGATCAGTGTGA 8084 |||||| | || ||||| ||||| Sbjct 40756 CCAGCACATTGCCGATCAATGTGA 40733 >seq2563683 Length=175 Score = 100 bits (110), Expect = 8e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040 |||||||| ||||| || ||||||||||| || ||| |||| || ||||| | ||| Sbjct 123 GTCGGTAATCCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTT 64 Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAA 8093 ||||| ||||||||||| |||||||| |||| |||||||| || |||||| Sbjct 63 GGTGAGTGCTGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAA 11 >seq2559636 Length=175 Score = 100 bits (110), Expect = 8e-17 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 7981 GTCGGTAACCCACTACGTAAGCTGGTGCTCATTAAGCTGGCTGATAACGCGAATGACAAA 8040 |||||||| || ||||| ||||||||||| || ||| |||| || ||||| | ||| Sbjct 123 GTCGGTAATCCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTC 64 Query 8041 GGTGAATGCTGGCCGTCATACCAGCATGTCGCTGATCAGTGTGAATGCAGCAA 8093 ||||| ||||||||||| |||||||| |||| |||||||| || |||||| Sbjct 63 GGTGAGTGCTGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149248932754112