Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019541.1
Length=45364
Score E
Sequences producing significant alignments: (Bits) Value
seq3083971 109 2e-19
seq3087344 98.7 3e-16
>seq3083971
Length=2830
Score = 109 bits (120), Expect = 2e-19
Identities = 202/294 (69%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 18029 GACATGATCATCTACAACCAACTGGCTCAAACAGCCTATTTAGAACGATTACAAGACAAT 18088
||| |||||||||||||| | ||| ||||| || || | ||||| | || |||||
Sbjct 2082 GACCTGATCATCTACAACGATGAGGCGCAAACCGCATACCTGGAACGTGTTCAGGACAAC 2023
Query 18089 TTGAATGTTTTTAATGAAGCTTCCAATGGTGCGATTATTTATCG-TAATGAAATCATTCA 18147
|| |||| || |||| | | ||||| || || | | | ||| ||| ||||| || |
Sbjct 2022 CTGGATGTATTCAATGCATCCTCCAACGGCGCCA-TCGTCCTCGATAACGAAATGATCGA 1964
Query 18148 AGGTGACTTCAATAAAAATGCATTCTACAAAGTTGGTGGTAGCATTAAACATCGCGATGT 18207
||| || ||| || || ||||||||| | || || || | | || ||||| ||
Sbjct 1963 AGGCGATTTCCGCAAGCGCGCTTTCTACAAACTCGGCGGCGGCCTGGATCACCGCGACGT 1904
Query 18208 GAACTCCAATGCAAAAGTAACTCCGGAAAAAATCGGTGCAGGTGAGTCTGTAGGTGTAAA 18267
|||||| | || ||||| | || | || ||||| || || || |||| ||||| ||
Sbjct 1903 CAACTCCGAAGCCAAAGTGGTTTCGAAGAAGATCGGCGCTGGCGAAGCTGTTGGTGTGAA 1844
Query 18268 AATTCCATATAAATATGGTCCTTATGCATCAACTGAAGAGGCATTTAAGCGCCG 18321
||| | |||||||| || || | | || |||||||| || ||||| ||
Sbjct 1843 GGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTTCAAGCGTCG 1790
>seq3087344
Length=5003
Score = 98.7 bits (108), Expect = 3e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 18488 ACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCGAATTGGCTTATGGGTGATGAAC 18547
||||| |||||||||||||| || || ||||| ||||| |||| | ||||| ||| ||
Sbjct 3795 ACTCGCGGTATGCGAAAGTTCGGCGACAAGTTCGGCCGTATTGCTCTGTGGGTCATGCAC 3736
Query 18548 TCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTACGGTGAATCT 18607
|| | || ||||| || ||||| || || ||||| || | || |||| ||| ||
Sbjct 3735 TCCAGCGCCTACTTCGACATCGTCGACGAAGCCATCACCAACAAGATCTACGAAGAAGCT 3676
Query 18608 GAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTGGTGACGGA 18666
| | || ||||| || || | || || || || || ||||| ||| ||||||| ||
Sbjct 3675 GGCGTTGTGATCTACGGCGGCCTGCCGGGCACTTTGGGCAAGCCTGTACTGGTGACCGA 3617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139723585715732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |