Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq3083971 109 2e-19 seq3087344 98.7 3e-16 >seq3083971 Length=2830 Score = 109 bits (120), Expect = 2e-19 Identities = 202/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 18029 GACATGATCATCTACAACCAACTGGCTCAAACAGCCTATTTAGAACGATTACAAGACAAT 18088 ||| |||||||||||||| | ||| ||||| || || | ||||| | || ||||| Sbjct 2082 GACCTGATCATCTACAACGATGAGGCGCAAACCGCATACCTGGAACGTGTTCAGGACAAC 2023 Query 18089 TTGAATGTTTTTAATGAAGCTTCCAATGGTGCGATTATTTATCG-TAATGAAATCATTCA 18147 || |||| || |||| | | ||||| || || | | | ||| ||| ||||| || | Sbjct 2022 CTGGATGTATTCAATGCATCCTCCAACGGCGCCA-TCGTCCTCGATAACGAAATGATCGA 1964 Query 18148 AGGTGACTTCAATAAAAATGCATTCTACAAAGTTGGTGGTAGCATTAAACATCGCGATGT 18207 ||| || ||| || || ||||||||| | || || || | | || ||||| || Sbjct 1963 AGGCGATTTCCGCAAGCGCGCTTTCTACAAACTCGGCGGCGGCCTGGATCACCGCGACGT 1904 Query 18208 GAACTCCAATGCAAAAGTAACTCCGGAAAAAATCGGTGCAGGTGAGTCTGTAGGTGTAAA 18267 |||||| | || ||||| | || | || ||||| || || || |||| ||||| || Sbjct 1903 CAACTCCGAAGCCAAAGTGGTTTCGAAGAAGATCGGCGCTGGCGAAGCTGTTGGTGTGAA 1844 Query 18268 AATTCCATATAAATATGGTCCTTATGCATCAACTGAAGAGGCATTTAAGCGCCG 18321 ||| | |||||||| || || | | || |||||||| || ||||| || Sbjct 1843 GGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTTCAAGCGTCG 1790 >seq3087344 Length=5003 Score = 98.7 bits (108), Expect = 3e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 18488 ACTCGTGGTATGCGAAAGTTTGGTGATAAGTTTGGCCGAATTGGCTTATGGGTGATGAAC 18547 ||||| |||||||||||||| || || ||||| ||||| |||| | ||||| ||| || Sbjct 3795 ACTCGCGGTATGCGAAAGTTCGGCGACAAGTTCGGCCGTATTGCTCTGTGGGTCATGCAC 3736 Query 18548 TCAGATACATATTTCGATATTGTCGATGATGCTATCACTAAGCAAATTTACGGTGAATCT 18607 || | || ||||| || ||||| || || ||||| || | || |||| ||| || Sbjct 3735 TCCAGCGCCTACTTCGACATCGTCGACGAAGCCATCACCAACAAGATCTACGAAGAAGCT 3676 Query 18608 GAAATCGTTATCTATGGTGGTTTACCAGGAACCTTAGGAAAGCCGGTATTGGTGACGGA 18666 | | || ||||| || || | || || || || || ||||| ||| ||||||| || Sbjct 3675 GGCGTTGTGATCTACGGCGGCCTGCCGGGCACTTTGGGCAAGCCTGTACTGGTGACCGA 3617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139723585715732