Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq249707 102 2e-17 seq2787364 95.1 4e-15 seq330729 80.6 8e-11 >seq249707 Length=409 Score = 102 bits (112), Expect = 2e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 45984 TGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACC 46042 || |||| |||||| | ||||| ||||||||||| ||| || ||| |||| ||||| Sbjct 3 TGCTGACCCATATGCTGGCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACC 61 Query 46043 GGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA-AGCGAAACTGCAGCTGACGCG 46101 ||||||| |||| || | || ||| ||||||| | | || |||||| |||| Sbjct 62 ACCGGCGACACCCATGCCTATAGCAACCATATGGAACAGATCCGCAC-CCAGCTGGCGCG 120 Query 46102 CGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTA 46161 | |||| ||||||| | || |||||||| || |||||| |||| |||| |||||| Sbjct 121 CACGCCGAAGAAGCTGCCGGAACTGGTGATCAAGCGTAAGCCGGCGTCGATCTATGACTA 180 Query 46162 TGAATACGAGGATTTTGAATTTGTCGGCTATGAC 46195 | | ||| || || || |||| ||||| ||| Sbjct 181 CAAGTTCGAAGACTTCGAGATTGTGGGCTACGAC 214 >seq2787364 Length=229 Score = 95.1 bits (104), Expect = 4e-15 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 46001 GCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059 ||||| ||||||||||| ||| || ||| |||| ||||| |||||| ||| Sbjct 225 GCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACCACTGGCGACACCCACGC 167 Query 46060 GTACAAAAATCATCTGGAACA-AGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGC 46118 ||||| || || ||||||| | | ||| |||||| ||||| |||| ||||| Sbjct 166 GTACAGCAACCACATGGAACAGATCCGCACT-CAGCTGGCGCGCACGCCGAAAAAGCTGC 108 Query 46119 CGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTG 46178 || | || |||||||| || || || |||| |||| |||||| | | ||| || |||| Sbjct 107 CGGAACTGGTGATCAAGCGCAAACCTGCGTCGATCTACGACTATAAGTTCGAAGACTTTG 48 Query 46179 AATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCT 46216 || | |||||||| ||| || |||| || |||||| Sbjct 47 AAATCGTCGGCTACGACGCGGACCCAAGCATCAAGGCT 10 >seq330729 Length=1359 Score = 80.6 bits (88), Expect = 8e-11 Identities = 129/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 45984 TGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACC 46042 || |||| || ||| | ||||| ||||||||||| ||| || ||| |||| ||||| Sbjct 1357 TGCTGACCCACATGCTGGCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACC 1299 Query 46043 GGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAA--GCGAAACTGCAGCTGACGC 46100 ||||||| ||| ||||| || || |||||||| || | | |||||| ||| Sbjct 1298 ACCGGCGACACCCACGCGTACAGCAACCACATGGAACAAATCCGCACC--CAGCTGGCGC 1241 Query 46101 GCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACT 46160 | |||| ||||||| |||| |||||||| || || ||| |||| |||| |||| Sbjct 1240 GTACGCCGAAGAAGCTGCCGGAGCTGGTGATCAAGCGCAAACCGGCGTCGATCTACGACT 1181 Query 46161 A 46161 | Sbjct 1180 A 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151964735582854