Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019544.1
Length=49335
Score E
Sequences producing significant alignments: (Bits) Value
seq249707 102 2e-17
seq2787364 95.1 4e-15
seq330729 80.6 8e-11
>seq249707
Length=409
Score = 102 bits (112), Expect = 2e-17
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 45984 TGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACC 46042
|| |||| |||||| | ||||| ||||||||||| ||| || ||| |||| |||||
Sbjct 3 TGCTGACCCATATGCTGGCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACC 61
Query 46043 GGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACA-AGCGAAACTGCAGCTGACGCG 46101
||||||| |||| || | || ||| ||||||| | | || |||||| ||||
Sbjct 62 ACCGGCGACACCCATGCCTATAGCAACCATATGGAACAGATCCGCAC-CCAGCTGGCGCG 120
Query 46102 CGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTA 46161
| |||| ||||||| | || |||||||| || |||||| |||| |||| ||||||
Sbjct 121 CACGCCGAAGAAGCTGCCGGAACTGGTGATCAAGCGTAAGCCGGCGTCGATCTATGACTA 180
Query 46162 TGAATACGAGGATTTTGAATTTGTCGGCTATGAC 46195
| | ||| || || || |||| ||||| |||
Sbjct 181 CAAGTTCGAAGACTTCGAGATTGTGGGCTACGAC 214
>seq2787364
Length=229
Score = 95.1 bits (104), Expect = 4e-15
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 46001 GCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059
||||| ||||||||||| ||| || ||| |||| ||||| |||||| |||
Sbjct 225 GCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACCACTGGCGACACCCACGC 167
Query 46060 GTACAAAAATCATCTGGAACA-AGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGC 46118
||||| || || ||||||| | | ||| |||||| ||||| |||| |||||
Sbjct 166 GTACAGCAACCACATGGAACAGATCCGCACT-CAGCTGGCGCGCACGCCGAAAAAGCTGC 108
Query 46119 CGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTG 46178
|| | || |||||||| || || || |||| |||| |||||| | | ||| || ||||
Sbjct 107 CGGAACTGGTGATCAAGCGCAAACCTGCGTCGATCTACGACTATAAGTTCGAAGACTTTG 48
Query 46179 AATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCT 46216
|| | |||||||| ||| || |||| || ||||||
Sbjct 47 AAATCGTCGGCTACGACGCGGACCCAAGCATCAAGGCT 10
>seq330729
Length=1359
Score = 80.6 bits (88), Expect = 8e-11
Identities = 129/181 (71%), Gaps = 6/181 (3%)
Strand=Plus/Minus
Query 45984 TGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCG-GCGAACTCATTTTCACC 46042
|| |||| || ||| | ||||| ||||||||||| ||| || ||| |||| |||||
Sbjct 1357 TGCTGACCCACATGCTGGCCCAGCAATGCGACCT-GATCCCGCACGAGATCATCGTCACC 1299
Query 46043 GGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAA--GCGAAACTGCAGCTGACGC 46100
||||||| ||| ||||| || || |||||||| || | | |||||| |||
Sbjct 1298 ACCGGCGACACCCACGCGTACAGCAACCACATGGAACAAATCCGCACC--CAGCTGGCGC 1241
Query 46101 GCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACT 46160
| |||| ||||||| |||| |||||||| || || ||| |||| |||| ||||
Sbjct 1240 GTACGCCGAAGAAGCTGCCGGAGCTGGTGATCAAGCGCAAACCGGCGTCGATCTACGACT 1181
Query 46161 A 46161
|
Sbjct 1180 A 1180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151964735582854
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |