Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019704.1
Length=44375
Score E
Sequences producing significant alignments: (Bits) Value
seq3087926 167 6e-37
seq3087822 109 2e-19
seq307661 95.1 3e-15
seq3043706 82.4 2e-11
>seq3087926
Length=6391
Score = 167 bits (184), Expect = 6e-37
Identities = 684/1049 (65%), Gaps = 47/1049 (4%)
Strand=Plus/Minus
Query 13243 CTCCGCTTCCACGCACACAATATCGCACACACCCCGGAAGAG--ATTGAAGCCGCAGGCG 13300
|| |||||||||| || ||| | ||||| ||||| || |||| ||| ||
Sbjct 5942 CTGCGCTTCCACGGTCATGCTATTCCGCACACGCCGGACGAACTATTG-----GCATACG 5888
Query 13301 -GGGATGAGAATA--AACTTCCGGCGAAGTCCATATGGTGGCAGGGGGAGGAATATAAAG 13357
||||| |||| | || ||||| ||||| || ||||||||||| | || || |
Sbjct 5887 AGGGATCAGAAGCCGATCTGCCGGCTAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGG 5828
Query 13358 CCTGGCCATGTCAGGTGGAGGGTATTGAGGCGACCACAGACGGTACCAGCCCACAGCC-- 13415
||||||| || | || ||||| | | | || ||||| || |||| |||
Sbjct 5827 CCTGGCCGGTGCAAATTGAAGGTATCGGTTCCAGCAGCGACGGAAC-AGCCACTCGCCCG 5769
Query 13416 AAAATTGACGGTGGCGAACCTGGACAGCTCGATCTCAGCGCTCTGTCTGGCGTATGACGA 13475
| | ||| || ||| ||| | | | || ||||||| || ||||||| || ||
Sbjct 5768 ACATTTGCCGCCGGC-AACATCAATGGGCGTGTCACAGCGCTGTGCCTGGCGTTCGAGGA 5710
Query 13476 TCTGCTGCAGGCGAAAGTGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAA 13535
|||||| || || | | | ||| ||| ||| |||| ||||||||||| || ||
Sbjct 5709 CCTGCTGAAGTTCAAGCTCACTGTCCGCGAGACGTTGGCGCAGTATCTGGATGCAGCGAA 5650
Query 13536 TTTTCCGCAGGGCAATCCCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATAT 13595
| ||| |||||||||| ||||||||| || | ||||| |||| || ||| || ||
Sbjct 5649 CTACCCGGAGGGCAATCCGACTGCAGACTCGACCCAGGAGGCGCTGGAGATCTGGTACAT 5590
Query 13596 CGATGCCAGAAG--CACCGAG-ACGGATGAATCTGTTGAATTTACGCTTTCCAGTCC-GA 13651
||| ||||||| || |||| |||| || | || | | ||| || ||| |
Sbjct 5589 CGA--CCAGAAGACCAGCGAGGACGGC-GAGGCGGTGGTCTGGGAGCTGTCGTCTCCTGG 5533
Query 13652 TG-GATTTACAGGGCCAGATGATACCCACGCGGCAGCTGCATTCGTTATGCAGCTGGTGC 13710
|| ||| ||| ||| | ||| ||| ||| || |||| ||| |||| |
Sbjct 5532 TGAGATCGACAA--CCATGGACTTCCCGGGCGCCAGATGACGACGTTCTGCCACTGGGCC 5475
Query 13711 ATCCGGAACAA--GTACCGGACCGGCGACGGCTGCGACTATGCCGGAACGCGCTAT-TTC 13767
|| || ||| || | || | || | ||||| ||| |||| || || || |||
Sbjct 5474 AT---GACCAATGGTTACCGAGGGCCG--GACTGCGGCTACACCGGCGCG-GCCATGTTC 5421
Query 13768 GACAAAAACAATAATCCGGTTGACGATCCATCGCTGGATGTCTGCAACGGCACGCTGACG 13827
||| | | | || || || ||||| | |||| ||||| ||| ||| ||
Sbjct 5420 GACGACGAAGACAACCCCACGGATGATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCG 5361
Query 13828 GCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTTGGCGGTTTCCCCGGTACA 13887
|||||||| | || ||| || | |||||| ||| | |||||||| |||||||
Sbjct 5360 TCCTGCAAGTTGCGATTCGGCGAGAACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTG 5301
Query 13888 TCTCTTAT---CAGGAGCTGAT-ATGCGCCAGAAAACCATTGATGCCATCATGGCACACG 13943
||||| || | |||||||| |||||| || | | ||||| |||||| ||| || |
Sbjct 5300 TCTCTCATTGCCCGGAGCTGACCATGCGCAAGCACATCATTGCGGCCATCCAGGCGCATG 5241
Query 13944 CTGCAGCGGAATATCCGCGAGAGTGCTGCGGC---GTGGTGGCACAGAAAAGCCGGGTTG 14000
| || |||| ||||||||||||||||||||| || |||| | |||| |
Sbjct 5240 CGGCGACGGAGTATCCGCGAGAGTGCTGCGGCCTGCTGTTGGCCGTG---GGCCGCGCGC 5184
Query 14001 AGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTGAACATTTTCACCTGTCCC 14060
|| || || || || || || | || ||||||| ||| | || | || ||
Sbjct 5183 AGAAGTACTTCCCGTGCCGGAACATAGCCAAGGAGCCGAACGAAGAGTTCCGGCTTGACC 5124
Query 14061 CCGAAGATTACGCAGCGGCAGAAGACTGGGGGACGGTGGTGGCCATTGTTCACAGCCATC 14120
|||| || ||||| ||||| ||||||| ||| |||| | | ||| || ||| || |
Sbjct 5123 CCGAGGACTACGCCGCGGCGGAAGACTTGGGCGAGGTGATCGGCATCGTCCACTCGCACC 5064
Query 14121 CTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCGCAGTGTGATGCAACGCTGCTG 14179
| || || || | ||||||| | || || ||| |||||| || ||| ||
Sbjct 5063 CGGACGCCACCA-GCAGGCCCTCACCGCATGACTTGGCCATGTGTGAGGCCACGGCTTTG 5005
Query 14180 CCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACCATTCAGCCACGCGGGGAG 14239
|| ||||| || || ||||| ||||| || | || || ||| ||| ||||| ||
Sbjct 5004 CCATGGCACATCCTGTCTTGGCCCGAGGGTGACTGGCGCACGATTACGCC-GGCGGGTAG 4946
Query 14240 C-TGCCATTGCTGGAGCGTCCGTTCGTGC 14267
| ||| |||| |||| ||||||||||
Sbjct 4945 CACGCCGCTGCTCAAGCGCCCGTTCGTGC 4917
>seq3087822
Length=6084
Score = 109 bits (120), Expect = 2e-19
Identities = 327/495 (66%), Gaps = 16/495 (3%)
Strand=Plus/Minus
Query 13810 TGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTT 13869
||||| ||| ||| || |||||||| | || ||| || | |||||| ||| | ||
Sbjct 2094 TGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTC 2035
Query 13870 GGCGGTTTCCCCGGTACATCTCTTAT---CAGGAGCTGA-TATGCGCCAGAAAACCATTG 13925
|| || ||||||| || || || | |||||||| ||||||| || | | |||||
Sbjct 2034 GGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTG 1975
Query 13926 ATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGAGAGTGCTGCGG---CGTGGTGG 13982
|| || ||| ||||| || |||||||||||||| || |||||||| || |||
Sbjct 1974 CCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGG 1915
Query 13983 CACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTG 14042
| | |||| | | || || || || || || || |||| | ||||||| |
Sbjct 1914 CCGTG---GGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCG 1858
Query 14043 AACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGGACGGTGGTGG 14102
|| | || | || ||||| | ||||| |||||||| |||| ||| |||| | |
Sbjct 1857 AAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCG 1798
Query 14103 CCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCGCAG 14161
|| || ||| || || || || || | || | ||| | || || || |
Sbjct 1797 GTATAGTCCACTCACACCCGGACGCAACCA-GCCGCCCATCACCGCACGACCTTGCCATG 1739
Query 14162 TGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACC 14221
||||| || ||| |||||||||||||| | ||||| ||||| || | || ||
Sbjct 1738 TGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACG 1679
Query 14222 ATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGCTTGGCCACTTCGA 14280
|| |||| |||| | | ||| |||| |||| |||||||| | || || ||
Sbjct 1678 ATCACGCCA-ACGGGCACCACGCCGCTGCTCAAGCGGCCGTTCGTACACGGGGCCTGGGA 1620
Query 14281 TTGCTGG--GGTCTG 14293
||||||| ||||||
Sbjct 1619 TTGCTGGCAGGTCTG 1605
>seq307661
Length=865
Score = 95.1 bits (104), Expect = 3e-15
Identities = 201/294 (68%), Gaps = 6/294 (2%)
Strand=Plus/Plus
Query 13315 CTTCCGGCGAAGTCCATATGGTGGCAGGGGGAGGAATATAAAGCCTGGCCATGTCAGGTG 13374
|| ||||| ||||| || ||||||||||| | || || |||||||| ||| |
Sbjct 522 CTGCCGGCAAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGGCCTGGCCGGTGCAGATA 581
Query 13375 GAGGGTATTGAGGCGACCACAGACGGTACCAGCCCACAGCCAAAATT-GACGGTGGCGAA 13433
|| || |||| | | | ||||| || | | | ||| | ||| | || |||| ||
Sbjct 582 GAAGGCATTGGCTCAAGTAGCGACGGCACGGCCACCCGGCCGACATTCGCCGCTGGC-AA 640
Query 13434 CCTGGACAGCTCGA-TCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAG 13492
| | || | ||| | | ||||| || ||||||| || || ||||| || |||
Sbjct 641 CGTCAACGG-TCGCGTGACGGCGCTGTGCCTGGCGTTCGAGGACATGCTGAAGTTCAAAC 699
Query 13493 TGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATC 13552
| | | ||| ||| || ||||| ||||| ||||| || || | ||| |||||||||
Sbjct 700 TCACTGTCCGCGAGACTCTGGCGCAGTACCTGGATGCAGCGAACTACCCGGAGGGCAATC 759
Query 13553 CCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATATCGATGCCAGAA 13606
| |||||||||||| | ||||| |||| || ||| || ||||| ||||||
Sbjct 760 CGACTGCAGACCCGACCCAGGAGGCGCTGGAGATCTGGTACATCGA--CCAGAA 811
>seq3043706
Length=1055
Score = 82.4 bits (90), Expect = 2e-11
Identities = 229/348 (66%), Gaps = 5/348 (1%)
Strand=Plus/Plus
Query 15905 ACAGAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTC 15964
|| || || ||||||||||||||||| || ||| | | ||| || | | | |||||
Sbjct 711 ACCGAAGTGATTGACGCCAAACTGCGCTACCCAGGTTCGGCGTTGATCGGCCTGCAATTC 770
Query 15965 GACTCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16024
|| || || ||| | || || ||| |||| ||||| ||| || || |
Sbjct 771 GATGCAGCGCAATTTCA---ATCAATTCCGTCGCGCTCCTTCGAACTGCGCGGCCGCATC 827
Query 16025 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGG 16084
||| || ||| | || |||||| | ||||| ||||||||| ||| ||
Sbjct 828 ATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGCGTGTGGGATGGC 887
Query 16085 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGC 16144
| || || | || ||||| || || || |||||||| | ||||| ||| || || |
Sbjct 888 ACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCAC 947
Query 16145 GACCGCTTTGGGCT-GGGCAATCGCCTGACGGCGGCCAATATTGATAAATGGACGCTTTA 16203
| |||| ||| || || || | || ||| ||||||| | || || ||| ||| ||
Sbjct 948 CAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAA-GTGGACAAGTGGGAGCTGTA 1006
Query 16204 TCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGG 16251
| ||| || || ||||| |||||||| | ||||| || |||||
Sbjct 1007 CCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGG 1054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136674858136134
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