Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq3087926 167 6e-37 seq3087822 109 2e-19 seq307661 95.1 3e-15 seq3043706 82.4 2e-11 >seq3087926 Length=6391 Score = 167 bits (184), Expect = 6e-37 Identities = 684/1049 (65%), Gaps = 47/1049 (4%) Strand=Plus/Minus Query 13243 CTCCGCTTCCACGCACACAATATCGCACACACCCCGGAAGAG--ATTGAAGCCGCAGGCG 13300 || |||||||||| || ||| | ||||| ||||| || |||| ||| || Sbjct 5942 CTGCGCTTCCACGGTCATGCTATTCCGCACACGCCGGACGAACTATTG-----GCATACG 5888 Query 13301 -GGGATGAGAATA--AACTTCCGGCGAAGTCCATATGGTGGCAGGGGGAGGAATATAAAG 13357 ||||| |||| | || ||||| ||||| || ||||||||||| | || || | Sbjct 5887 AGGGATCAGAAGCCGATCTGCCGGCTAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGG 5828 Query 13358 CCTGGCCATGTCAGGTGGAGGGTATTGAGGCGACCACAGACGGTACCAGCCCACAGCC-- 13415 ||||||| || | || ||||| | | | || ||||| || |||| ||| Sbjct 5827 CCTGGCCGGTGCAAATTGAAGGTATCGGTTCCAGCAGCGACGGAAC-AGCCACTCGCCCG 5769 Query 13416 AAAATTGACGGTGGCGAACCTGGACAGCTCGATCTCAGCGCTCTGTCTGGCGTATGACGA 13475 | | ||| || ||| ||| | | | || ||||||| || ||||||| || || Sbjct 5768 ACATTTGCCGCCGGC-AACATCAATGGGCGTGTCACAGCGCTGTGCCTGGCGTTCGAGGA 5710 Query 13476 TCTGCTGCAGGCGAAAGTGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAA 13535 |||||| || || | | | ||| ||| ||| |||| ||||||||||| || || Sbjct 5709 CCTGCTGAAGTTCAAGCTCACTGTCCGCGAGACGTTGGCGCAGTATCTGGATGCAGCGAA 5650 Query 13536 TTTTCCGCAGGGCAATCCCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATAT 13595 | ||| |||||||||| ||||||||| || | ||||| |||| || ||| || || Sbjct 5649 CTACCCGGAGGGCAATCCGACTGCAGACTCGACCCAGGAGGCGCTGGAGATCTGGTACAT 5590 Query 13596 CGATGCCAGAAG--CACCGAG-ACGGATGAATCTGTTGAATTTACGCTTTCCAGTCC-GA 13651 ||| ||||||| || |||| |||| || | || | | ||| || ||| | Sbjct 5589 CGA--CCAGAAGACCAGCGAGGACGGC-GAGGCGGTGGTCTGGGAGCTGTCGTCTCCTGG 5533 Query 13652 TG-GATTTACAGGGCCAGATGATACCCACGCGGCAGCTGCATTCGTTATGCAGCTGGTGC 13710 || ||| ||| ||| | ||| ||| ||| || |||| ||| |||| | Sbjct 5532 TGAGATCGACAA--CCATGGACTTCCCGGGCGCCAGATGACGACGTTCTGCCACTGGGCC 5475 Query 13711 ATCCGGAACAA--GTACCGGACCGGCGACGGCTGCGACTATGCCGGAACGCGCTAT-TTC 13767 || || ||| || | || | || | ||||| ||| |||| || || || ||| Sbjct 5474 AT---GACCAATGGTTACCGAGGGCCG--GACTGCGGCTACACCGGCGCG-GCCATGTTC 5421 Query 13768 GACAAAAACAATAATCCGGTTGACGATCCATCGCTGGATGTCTGCAACGGCACGCTGACG 13827 ||| | | | || || || ||||| | |||| ||||| ||| ||| || Sbjct 5420 GACGACGAAGACAACCCCACGGATGATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCG 5361 Query 13828 GCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTTGGCGGTTTCCCCGGTACA 13887 |||||||| | || ||| || | |||||| ||| | |||||||| ||||||| Sbjct 5360 TCCTGCAAGTTGCGATTCGGCGAGAACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTG 5301 Query 13888 TCTCTTAT---CAGGAGCTGAT-ATGCGCCAGAAAACCATTGATGCCATCATGGCACACG 13943 ||||| || | |||||||| |||||| || | | ||||| |||||| ||| || | Sbjct 5300 TCTCTCATTGCCCGGAGCTGACCATGCGCAAGCACATCATTGCGGCCATCCAGGCGCATG 5241 Query 13944 CTGCAGCGGAATATCCGCGAGAGTGCTGCGGC---GTGGTGGCACAGAAAAGCCGGGTTG 14000 | || |||| ||||||||||||||||||||| || |||| | |||| | Sbjct 5240 CGGCGACGGAGTATCCGCGAGAGTGCTGCGGCCTGCTGTTGGCCGTG---GGCCGCGCGC 5184 Query 14001 AGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTGAACATTTTCACCTGTCCC 14060 || || || || || || || | || ||||||| ||| | || | || || Sbjct 5183 AGAAGTACTTCCCGTGCCGGAACATAGCCAAGGAGCCGAACGAAGAGTTCCGGCTTGACC 5124 Query 14061 CCGAAGATTACGCAGCGGCAGAAGACTGGGGGACGGTGGTGGCCATTGTTCACAGCCATC 14120 |||| || ||||| ||||| ||||||| ||| |||| | | ||| || ||| || | Sbjct 5123 CCGAGGACTACGCCGCGGCGGAAGACTTGGGCGAGGTGATCGGCATCGTCCACTCGCACC 5064 Query 14121 CTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCGCAGTGTGATGCAACGCTGCTG 14179 | || || || | ||||||| | || || ||| |||||| || ||| || Sbjct 5063 CGGACGCCACCA-GCAGGCCCTCACCGCATGACTTGGCCATGTGTGAGGCCACGGCTTTG 5005 Query 14180 CCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACCATTCAGCCACGCGGGGAG 14239 || ||||| || || ||||| ||||| || | || || ||| ||| ||||| || Sbjct 5004 CCATGGCACATCCTGTCTTGGCCCGAGGGTGACTGGCGCACGATTACGCC-GGCGGGTAG 4946 Query 14240 C-TGCCATTGCTGGAGCGTCCGTTCGTGC 14267 | ||| |||| |||| |||||||||| Sbjct 4945 CACGCCGCTGCTCAAGCGCCCGTTCGTGC 4917 >seq3087822 Length=6084 Score = 109 bits (120), Expect = 2e-19 Identities = 327/495 (66%), Gaps = 16/495 (3%) Strand=Plus/Minus Query 13810 TGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTT 13869 ||||| ||| ||| || |||||||| | || ||| || | |||||| ||| | || Sbjct 2094 TGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTC 2035 Query 13870 GGCGGTTTCCCCGGTACATCTCTTAT---CAGGAGCTGA-TATGCGCCAGAAAACCATTG 13925 || || ||||||| || || || | |||||||| ||||||| || | | ||||| Sbjct 2034 GGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTG 1975 Query 13926 ATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGAGAGTGCTGCGG---CGTGGTGG 13982 || || ||| ||||| || |||||||||||||| || |||||||| || ||| Sbjct 1974 CCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGG 1915 Query 13983 CACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTG 14042 | | |||| | | || || || || || || || |||| | ||||||| | Sbjct 1914 CCGTG---GGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCG 1858 Query 14043 AACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGGACGGTGGTGG 14102 || | || | || ||||| | ||||| |||||||| |||| ||| |||| | | Sbjct 1857 AAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCG 1798 Query 14103 CCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCGCAG 14161 || || ||| || || || || || | || | ||| | || || || | Sbjct 1797 GTATAGTCCACTCACACCCGGACGCAACCA-GCCGCCCATCACCGCACGACCTTGCCATG 1739 Query 14162 TGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACC 14221 ||||| || ||| |||||||||||||| | ||||| ||||| || | || || Sbjct 1738 TGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACG 1679 Query 14222 ATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGCTTGGCCACTTCGA 14280 || |||| |||| | | ||| |||| |||| |||||||| | || || || Sbjct 1678 ATCACGCCA-ACGGGCACCACGCCGCTGCTCAAGCGGCCGTTCGTACACGGGGCCTGGGA 1620 Query 14281 TTGCTGG--GGTCTG 14293 ||||||| |||||| Sbjct 1619 TTGCTGGCAGGTCTG 1605 >seq307661 Length=865 Score = 95.1 bits (104), Expect = 3e-15 Identities = 201/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 13315 CTTCCGGCGAAGTCCATATGGTGGCAGGGGGAGGAATATAAAGCCTGGCCATGTCAGGTG 13374 || ||||| ||||| || ||||||||||| | || || |||||||| ||| | Sbjct 522 CTGCCGGCAAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGGCCTGGCCGGTGCAGATA 581 Query 13375 GAGGGTATTGAGGCGACCACAGACGGTACCAGCCCACAGCCAAAATT-GACGGTGGCGAA 13433 || || |||| | | | ||||| || | | | ||| | ||| | || |||| || Sbjct 582 GAAGGCATTGGCTCAAGTAGCGACGGCACGGCCACCCGGCCGACATTCGCCGCTGGC-AA 640 Query 13434 CCTGGACAGCTCGA-TCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAG 13492 | | || | ||| | | ||||| || ||||||| || || ||||| || ||| Sbjct 641 CGTCAACGG-TCGCGTGACGGCGCTGTGCCTGGCGTTCGAGGACATGCTGAAGTTCAAAC 699 Query 13493 TGAGTATCCACGACACGCTGGCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATC 13552 | | | ||| ||| || ||||| ||||| ||||| || || | ||| ||||||||| Sbjct 700 TCACTGTCCGCGAGACTCTGGCGCAGTACCTGGATGCAGCGAACTACCCGGAGGGCAATC 759 Query 13553 CCACTGCAGACCCGTCACAGGAAAAGCTGAAGGTCTTTTATATCGATGCCAGAA 13606 | |||||||||||| | ||||| |||| || ||| || ||||| |||||| Sbjct 760 CGACTGCAGACCCGACCCAGGAGGCGCTGGAGATCTGGTACATCGA--CCAGAA 811 >seq3043706 Length=1055 Score = 82.4 bits (90), Expect = 2e-11 Identities = 229/348 (66%), Gaps = 5/348 (1%) Strand=Plus/Plus Query 15905 ACAGAGGTTATTGACGCCAAACTGCGTTATCCAAATACCGCGCTGCTGTACATCGAATTC 15964 || || || ||||||||||||||||| || ||| | | ||| || | | | ||||| Sbjct 711 ACCGAAGTGATTGACGCCAAACTGCGCTACCCAGGTTCGGCGTTGATCGGCCTGCAATTC 770 Query 15965 GACTCAAGCCAGTTTAACGGCTCTATCCCGCAAATATCCTGCGAACCGCGAGGGCGTGTA 16024 || || || ||| | || || ||| |||| ||||| ||| || || | Sbjct 771 GATGCAGCGCAATTTCA---ATCAATTCCGTCGCGCTCCTTCGAACTGCGCGGCCGCATC 827 Query 16025 ATCCGCGTTCCGGATACGTATGACCCGGAGACCCGCACCTACAGCGGCACATGGACAGGG 16084 ||| || ||| | || |||||| | ||||| ||||||||| ||| || Sbjct 828 ATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGCGTGTGGGATGGC 887 Query 16085 GCGTTTAAGTGGGCGTGGACGGATAATCCAGCCTGGATTTTTTACGATCTGGTGGTGAGC 16144 | || || | || ||||| || || || |||||||| | ||||| ||| || || | Sbjct 888 ACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCAC 947 Query 16145 GACCGCTTTGGGCT-GGGCAATCGCCTGACGGCGGCCAATATTGATAAATGGACGCTTTA 16203 | |||| ||| || || || | || ||| ||||||| | || || ||| ||| || Sbjct 948 CAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAA-GTGGACAAGTGGGAGCTGTA 1006 Query 16204 TCAGGTCGCGCAATATTGCGATCAGCCGGTTCCTGATGGTAAAGGCGG 16251 | ||| || || ||||| |||||||| | ||||| || ||||| Sbjct 1007 CCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGG 1054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136674858136134