Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq3087926 122 2e-23 seq3087822 114 3e-21 seq2884985 93.3 1e-14 seq3088057 87.8 4e-13 seq3088451 84.2 5e-12 seq347631 80.6 6e-11 >seq3087926 Length=6391 Score = 122 bits (134), Expect = 2e-23 Identities = 322/484 (67%), Gaps = 12/484 (2%) Strand=Plus/Minus Query 12356 GATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAA 12415 |||||| | |||| | ||||| || ||| || ||||||| | || ||||| || Sbjct 5396 GATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGATTCGGCGAG 5337 Query 12416 AACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-TA 12471 ||||||||||| || ||||| || ||||| | ||| || || | |||| ||| | Sbjct 5336 AACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCCCGGAGCTGACCA 5277 Query 12472 TGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGT 12531 |||| || | | ||| | || || ||||||||| || | || ||||| || |||| Sbjct 5276 TGCGCAAGCACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGTATCCGCGAGAGT 5217 Query 12532 GTTGCGGCGTGGTGGCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCG 12591 | |||||| || || | | |||| | |||| || || || || | ||| | | Sbjct 5216 GCTGCGGCCTGCTGTTGGCCGTGGGCCGCGCGCAGAAGTACTTCCCGTGCCGGAACATAG 5157 Query 12592 CTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACT 12651 | | ||||||| ||| | || | || || || ||||| || || || || |||| Sbjct 5156 CCAAGGAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTACGCCGCGGCGGAAGACT 5097 Query 12652 GGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCGAGCGAAC 12711 ||| |||||||| |||||| ||| ||||| |||||||| | |||| | | || Sbjct 5096 TGGGCGAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCACCA-GCAG--GCCCTCAC 5040 Query 12712 TGGATAA---AGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGG 12768 | || | || || || || ||| ||| || ||||| || || ||||| | Sbjct 5039 CGCATGACTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCACATCCTGTCTTGGCCCG 4980 Query 12769 AGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTT 12827 |||| || | ||||| || ||| ||| | || || ||| ||||| |||| ||||| Sbjct 4979 AGGGTGACTGGCGCACGATTACGCCGGCGGGTAGCAC-GCCGCTGCTCAAGCGCCCGTTC 4921 Query 12828 GTGC 12831 |||| Sbjct 4920 GTGC 4917 >seq3087822 Length=6084 Score = 114 bits (126), Expect = 3e-21 Identities = 301/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 12386 CTGACGGCCTGCAAACTTCGGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCG 12445 ||| || ||||||| | || ||||| |||||||||||||| || || ||||| ||||| Sbjct 2082 CTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTCGGTGGATTCCCC 2023 Query 12446 GGTACGTCGCTGA---TCAGGAGTTGA-TATGCGTCAGAAAACCATCGATGCGATTATGG 12501 | || |||| || |||| ||| |||||| || | | ||| | || ||| || Sbjct 2022 GCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTGCCGCTATTCAGG 1963 Query 12502 CGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGCAAAAGAGCCGGG 12561 |||| || || || |||||||| || || || ||||| || || | | |||| | Sbjct 1962 CGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGGCCGTGGGCCGCG 1903 Query 12562 TAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAACATTTTCACCTGT 12621 |||| || || || || | ||| |||| || ||||||| ||| | || | || Sbjct 1902 CTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCGAAGAGTTCAAGCTCG 1843 Query 12622 CGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGTC 12681 || || | ||| || || || ||||||| ||| |||||||| || || ||| | Sbjct 1842 ATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCGGTATAGTCCACTCAC 1783 Query 12682 ACCCTGACGCCACTACGCAGCC---GAGCGAACTGGATAAAGCGCAATGCGACGCAACGC 12738 |||| ||||| || | || ||| | || || || || || || || ||| Sbjct 1782 ACCCGGACGCAACCA-GCCGCCCATCACCGCAC--GACCTTGCCATGTGTGAGGCCACGG 1726 Query 12739 TTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACCATCCAGCC-GCGC 12797 | |||||||||||| | ||||| ||||| || | ||||| ||| ||| || Sbjct 1725 CCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACGATCACGCCAACGG 1666 Query 12798 GGAGAACTGCCACTGCTGGAGCGTCCGTTTGT 12829 | | || ||| ||||| |||| ||||| || Sbjct 1665 GCACCAC-GCCGCTGCTCAAGCGGCCGTTCGT 1635 >seq2884985 Length=308 Score = 93.3 bits (102), Expect = 1e-14 Identities = 168/244 (69%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 17334 CGCGGGGATGGGTATCGGCGTGGAGAATACGCCATCCGGCATGCAGTCGCAGGTTATCTT 17393 |||||| || || | || ||||||| | | |||| ||||||||||| | ||| | Sbjct 291 CGCGGGTATCGGGCTTGGGTTGGAGAACGGGTCGGGCGGCCTGCAGTCGCAGTTCATCAT 232 Query 17394 CCTGGCTGATCGCTTCGCCGTCACCACGGCA-GCCGGTAACAGCGTGGCTTTGCCGTTTG 17452 | || || || |||||| || |||| ||||| || |||| || |||| Sbjct 231 CGACGCCGACCGGTTCGCCATCG----GGCAAGCCGG---CATCGTG------CCCTTTG 185 Query 17453 TGATCCAGAATGGACAGACATTCATCCGGGCCAGTTTCATCCAGGACGGCACTATCAGCA 17512 | | ||| ||| ||||| ||||| | |||||||||||||||||| |||| || Sbjct 184 CGGTACAGGGTGGGCAGACTTTCATTAAATCGGCTTTCATCCAGGACGGCACGATCACCA 125 Query 17513 ACGCAAAGATTGGTAATTTTATCCAGTCGAACAATTATGTTGCTGGTTCTGCTGGCTGGA 17572 |||| ||||| || || | |||||||| || || || | | ||| |||||||||| Sbjct 124 ACGCCAAGATCGGCAACTACATCCAGTCCAATAACTACGACCCAGGTAAGGCTGGCTGGA 65 Query 17573 AGCT 17576 |||| Sbjct 64 AGCT 61 >seq3088057 Length=7030 Score = 87.8 bits (96), Expect = 4e-13 Identities = 198/297 (67%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 15004 AACCCTGCGTGGATTTTTTACGACCTGGTTGTTT---CTGACCGGTTTGGCCTCGGGCAC 15060 |||||||||||| | ||||| |||||||| | || || | |||||||| | Sbjct 5648 AACCCTGCGTGGGTGTTTTATGACCTGGTGCTGCACCCTTAC---TACGGCCTCGGCGAT 5704 Query 15061 CGTTTGACCGCTGCGAATATTGATAAATGGACTCTTTATCAGGTTGCTCAGTATTGTGAT 15120 || | || ||| ||||| ||| | ||||||| | || || || || ||| Sbjct 5705 CGCATCGATGCCACGATGGTTGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGAT 5764 Query 15121 CAGATGGTACCAGACGGCAAAGGGGGCAACGGTACAGAACCACGTTATACCTGCAACGTG 15180 |||||||| || || || ||||| ||| | || || || | |||||||||| || Sbjct 5765 CAGATGGTGCCGGATGGAAAAGG------CGGCATGGAGCCGCGCTTTACCTGCAACCTG 5818 Query 15181 TACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGT 15240 ||| | || | | | ||| |||||| | || |||| ||| | || | ||||| | Sbjct 5819 TACCTGCAAAAGCAGGCCGAGGCCTACGCGGTGCTGCAGGATCTGGCATCGATCTTTCAC 5878 Query 15241 GGCATGACCTACTGGGGCGGGGATCAGATTGTGGCCCTGGCTGACATGCCGCGCGAT 15297 || || ||||||||| ||| ||||| |||| | || || |||||| ||||| Sbjct 5879 GGTCTGGCCTACTGGGACGGCAGCCAGATCGTGGTCAACGCCGATATGCCGGGCGAT 5935 >seq3088451 Length=13260 Score = 84.2 bits (92), Expect = 5e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 14795 GCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCG 14854 ||| |||| ||||||| ||||| || ||||||||||| |||||||||||||| | ||||| Sbjct 11818 GCTACACCCAGGTGATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCG 11877 Query 14855 AATTCGACTCAAGCCAGTTCA 14875 | |||||| | ||||||| Sbjct 11878 AGTTCGACGCCGAGCAGTTCA 11898 >seq347631 Length=610 Score = 80.6 bits (88), Expect = 6e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 14767 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 14825 || ||| |||||||||| | | || | ||||||| |||||||| |||||||| | || Sbjct 530 AAAATCTCCGACACGATGCAGATTGCCG-GCTTCACAGAGGTGATCGACGCCAAGATCCG 472 Query 14826 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14858 ||||||||||||||| |||||||| |||| || Sbjct 471 TTACCCGAACACCGCGTTGCTCTACATCGAGTT 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115774582110174