Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq3088379 1088 0.0 seq3087926 122 2e-23 seq3087822 114 3e-21 seq3088057 96.9 9e-16 seq3088451 84.2 5e-12 seq347631 80.6 7e-11 >seq3088379 Length=10556 Score = 1088 bits (1206), Expect = 0.0 Identities = 2153/3171 (68%), Gaps = 54/3171 (2%) Strand=Plus/Plus Query 2066 TCGACGATTTCATTTTCCGACCGCTGAGCATGTGATGGAAGAACCTAAATACACGATTGA 2125 ||||||| ||| | | | ||||| ||||||||| |||| ||| | | |||| || || Sbjct 2099 TCGACGACTTCCTCTCCAGACCGATGAGCATGTAATGGCAGATACCGACTACAGCATCGA 2158 Query 2126 CCTGCGAACCAATAACGGCTGGTGGGCAAGGCTGAAGTCCTGGTTTGTCGGCGGGCGTTT 2185 |||||| || | | ||||| | || | || ||||||||||| || | Sbjct 2159 CCTGCGCACGCGCAGTCCATTCTGGGCGCGTATGGCGAGCTTCTTTGTCGGCGGCCGCCT 2218 Query 2186 AGTCACCCCAAATCAGGGCTCACAGACGGGGCCTGTTTCGGCCCACGGATACCTGGGCGA 2245 ||||| || | | || |||||||| || || || || ||||| || |||| || Sbjct 2219 GGTCACACCTGAAAAAGGTTCACAGACAGGCCCAGTATCAGCCCAGGGTGTAGTGGGTGA 2278 Query 2246 TTCATCCATTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCT-GCGTGAGCC 2304 ||| | | |||||||| || || || || |||| |||| |||| ||||| | | Sbjct 2279 TTCGGTCGTAAACGATGAGCGCTCGCTCCAGATCGCGACCGTGTT-CGCTTGCGTGCGGC 2337 Query 2305 TGATTTCAACGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAAC-AGACCAGAATGAC 2363 | || || | | || || ||| | || || || || ||| |||| | | ||| ||| Sbjct 2338 TTATCTCCAGCGTGACAGCTTGCATGCCACTGGACGTTTTCCAAACCAAAGGCGAA-GAC 2396 Query 2364 AACCGTAAAAAAGTGGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAAT 2423 | ||||| || | || || || ||||||||||| || ||| || || Sbjct 2397 AGG-GTAAAG--GTCGGGCTGGATAACCCGCTGGCGCGACTCCTTAAGTACCGCCCCAAC 2453 Query 2424 CAGTACATGACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGT 2483 | | |||||| ||| || || | | ||||||||| |||||||| || | ||||| Sbjct 2454 GACTTCATGACTGCCTTTGATTTTCGTGTGGCCATGACTATGCAGCTTTGCTATTACGGC 2513 Query 2484 AACGCATATGCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTACTCCCGCTT 2543 || || || || || | || ||||| | || || ||||| ||||| ||| | ||||| Sbjct 2514 AATGCCTACGCGCTGATTGAGCGCAATGGGGCTGGGGACGTAATCAGTCTAGTGCCGCTC 2573 Query 2544 CAGTCTGCCAATATGGATGTGAAACTCGTCGGaaaaaaaGTGGTTTATCGCTATCAACGC 2603 ||||| || |||||||| | | || || | ||||| || |||| ||| Sbjct 2574 ATGTCTGTGAACATGGATGTTCGCTTGGAGGGTAAGCGGATCGTTTACCGATATCGCCGC 2633 Query 2604 GACAGCGAATACGCCGACTTTTCGCAGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTC 2663 |||| | | ||||| || || ||| | || ||||||||||| || || || || || Sbjct 2634 GACACCAAGTACGCAGATTTCAAGCAAAGCGATATTTTTCACCTGAAGGGTTTTGGTTTT 2693 Query 2664 ACCGGGCTTGTAGGCCTGTCACCCATTGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTT 2723 | ||| || || ||||| || || |||||||| || || | || ||||| || ||| Sbjct 2694 AACGGCCTGGTTGGCCTTTCGCCGATTGCTTTCGCAGCGAAGACCGCCGGTGTAGCCGTT 2753 Query 2724 GCGATGGAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTC 2783 |||||||| || |||||||| || || | ||||||||| |||||||| |||||| | || Sbjct 2754 GCGATGGAAGATCAGCAGCGCGACTTTTATGCCAACGGTGCCAAGTCCCCGCAACTTCTT 2813 Query 2784 TCAACTGGCGA---AAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTC 2840 || || || ||| || || | | | ||||| | || ||||| ||||| ||| Sbjct 2814 ATGACAGGGGATGGAAAGGTTCTCAACAAGGATCAGCGGGCGCAAGTCGAGGAGAATTTC 2873 Query 2841 AAAGAGATCGCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCT 2900 || ||||| ||||||| || || || || || |||||||| |||| | |||||| | Sbjct 2874 AAGGAGATATCCGGCGGGCCAGTCAAGAAGCGTCTCTGGATCTTGGAGGGAGGTTTTACG 2933 Query 2901 ACATCGGCAATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAG 2960 || ||| || ||||| | ||||| || ||||| | ||||| || |||| || ||| Sbjct 2934 ACCCAGGCCATAGGCGTGAGCCCGCAAGACGCCGAGACAATGGCTGCCAGAAAGTTCCAG 2993 Query 2961 GTAAGTGAACTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAA 3020 || ||||| |||||||| ||||| ||||| ||||| || || || |||||||| || || Sbjct 2994 GTGAGTGAGCTGGCGCGGTTCTTCGGCGTGCCGCCGCATCTGGTGGGCGACGTTGAAAAG 3053 Query 3021 TCAACGAGCTGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTG 3080 ||||| |||||||| || || |||||||| ||||| || ||||| || |||||| | || Sbjct 3054 TCAACCAGCTGGGGGTCAGGTATCGAGCAACAGAACCTGGGCTTTCTCCAGTACGCGCTC 3113 Query 3081 CAGCCCTATATCTCCAGGTGGGAAAACAGCATTCAGCGGTGGCTTATTCCTGCTAAGGAT 3140 | || || | | ||||| | |||||| ||| |||||| | | | || Sbjct 3114 GACCCTTACCTTGAAATTTGGGAGGGCTGCATTCTGCGATGGCTTGTAAAGCCGAGCGAC 3173 Query 3141 GTTGGCCGCATTCATGCTGAGCACAACCTCGACGGCCTGCTGAGGGGAGATTCGGCATCC 3200 | || | |||||||||||||||| ||||| ||||||| || || || | || Sbjct 3174 CTCGGGGTGTTCCATGCTGAGCACAACCGAGACGGGTTGCTGAGTGGTGACTCAACCGCC 3233 Query 3201 CGCGCTGCCTTTATGAAGGCAATGGGAGAGTCAGGGCTACGCACCATCAACGAGATGCGA 3260 ||||| | | || | || || | ||||| | || ||||||| || Sbjct 3234 CGCGCGAATTACCTAAAAACGTTGATTGATACCGGGCTGCTGACTCCCAACGAGGGCCGG 3293 Query 3261 CGAACGGACAACCTCCCGCCATTGCCGGGTGGCGATGTGGCAATGCGCCAGTCGCAATAC 3320 ||| ||| ||| |||| || ||||| || || | ||||| |||||| || Sbjct 3294 CGAGTCAGCAATAGGCCGAAGCTGCCCGGCGGCGACGTCGCCACACGCCAATCGCAAAAC 3353 Query 3321 GTGCCGATC-ACCGATTTAGGAACCAACAAAGAGCCCCGTAA-TAACGGGGCTTAATTTT 3378 |||||| | | | | || | | ||||| ||||| | ||||| ||| |||| Sbjct 3354 GTGCCGCTTGATCAACTTGGTCA-----AAAGAACCCCGCCCCTGGCGGGGTTTAGTTTT 3408 Query 3379 TATGGGGGC-CGTAATGCCTGAAATCGTAAAAACGCTGTCCTTCGACGAGACAGAAATCA 3437 | ||| | | |||| | | || ||| || || | ||| |||||| |||||| Sbjct 3409 TCTGGAGCTACCCAATGGCAAATATTCAAAAGACCTTGGCGTTCACCGAGACTCAAATCA 3468 Query 3438 AATTCACCGGTGACGGTAAACAGGGGATTTTTGAAGGCTACGCCTCTGTTTTTAATAACA 3497 | ||| || || || || || | || || || |||||| |||||| | || Sbjct 3469 AGTTCTCCTCGGATGGCAAGGTTGGTGTGTTCGAGGGGTACGCCAGTGTTTTCGACGTCA 3528 Query 3498 CCGATTCCGATGGCGACATCATTCTGCCCGGGGCGTTTAAAAACGCGCTGGCGAACCAGA 3557 ||| || || ||||||||||| |||||||| || || || || || || | || | Sbjct 3529 TCGACTCAGACGGCGACATCATCCTGCCCGGCGCCTTCAAGAAGGCTTTGTCTTCGCAAA 3588 Query 3558 CCCGAAAAGTGGCGATGTTTTTTAACCACAGGACGTGGGAACTGCCGGTTGGCAAATGGG 3617 ||| |||| | |||||||||||||| ||| | | ||||| ||||| || ||| Sbjct 3589 GCCGCCAAGTCGGCATGTTTTTTAACCATCAGACCTACGGCCTGCCTGTTGGAAAGTGGC 3648 Query 3618 ACAGCCTGGCTGAGGACGAAAAAGGCCTGTATGTGCGCGGTCAACTTACCCCAGGACACA 3677 | ||||| |||||| ||||| || | || | || | || || || || Sbjct 3649 AGTCGCTGGCGGAGGACAGCAAAGGACTCTTCGTTGGAGGCGAGCTGACGCCCGGTTTGT 3708 Query 3678 GCGGCGCCGCTGACCTGAAAGCGGCAATGCAGCACGGTACGGTTGAAGGTATGTCGGTTG 3737 | | || ||||| || || ||| | || || || || ||| ||||||||| Sbjct 3709 CGGTCTCCAACGACCTCCGGGCAGCCATGGAACATAAGACCGTCGAGGGTTTGTCGGTTG 3768 Query 3738 GCTTTTCCGTTTCGAAAGACGATTACACCATCATTCCAACAGGCCGCATTTTTAAGAATA 3797 |||| |||| || ||||||||| || |||| || |||||| || | ||| Sbjct 3769 GCTTCACCGTCCTCAAGGACGATTACGCCGTCATCGATACCGGCCGCGCATTCAGCAATG 3828 Query 3798 TCCAGGCTCTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCG 3857 ||||||| ||||| || |||||| | ||||| || || ||||| || ||||| ||| | Sbjct 3829 TCCAGGCCCTGCGAGAGATCAGCATTTGCACCTTTCCTGCCAATGAGCAGGCGACCATTG 3888 Query 3858 CAGCCATGAAAAGTGTCGATGGTATTGAA----ACGATTCGTGATGTGGAGAACTGGCTG 3913 ||||||||||| |||| || || || ||||| ||||| ||| | |||||| Sbjct 3889 ACGCCATGAAAAGC----ATGGAATCGATCAGCACCATTCGCGATGTAGAGCATTGGCTG 3944 Query 3914 AGGGATTCAGTCGGCCTCACCAAATCACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCA 3973 |||||||| | ||| || | || || || || | || || || |||||| | ||||| Sbjct 3945 AGGGATTCGGCCGGTCTTTCGAAGTCGCAAGCCCTGGGCCTGATAGCCCGGATCAAGTCC 4004 Query 3974 GCGATTCGGAGCGAGTCCGAGGGCGACGGAAACGAAGCACAAATAAACGCTCTGCTTCAG 4033 || ||||||| || ||||| || | || |||| | ||| | || | Sbjct 4005 GCAGTTCGGAGTGATTCCGAAGGTGGCG------------AAATCACCGCGATCCTGGAT 4052 Query 4034 AGCATCAAATCTTTCCCTTCTAACTTAGGTAAATAATT-ATGTCTGAACTCGCTCTCATT 4092 ||||||| || ||||| ||| |||| || ||| ||||| ||| | || | ||| Sbjct 4053 CGCATCAAGTCATTCCCATCTG---TAGGAAATTAAACCATGTCCGAATTGGCCCAAATT 4109 Query 4093 CAAAAAGCTATCGAAGAATCCCAGCAGAAAATGACCCAGCTTTTCGATGCGCAGAAAGCA 4152 ||||| || |||||| | || ||| ||||| |||| ||||| ||||| || | Sbjct 4110 CAAAAGGCAATCGAAACCGCGCAAACGAACATGACTGAGCTGTTCGAGGCGCAAAAGAAA 4169 Query 4153 GAAATCGAAAGCACAGGCCAGGTTTCCAAACAGTTGCAGTCCGACCTGATGAAAGTACAG 4212 || ||| ||| ||| | || ||| || | || |||||||| || ||| ||| Sbjct 4170 GAGATCACCGCCACCGGCGAAGTGAGCAAGAAGATTCAAACCGACCTGCAGACAGTGCAG 4229 Query 4213 GAAGAGCTGACCAAATCCGGCACTCGCCTCTTCGATCTGGAACAGAAACTGGCATCCGGC 4272 || || |||| | ||||| | ||| | |||||||| || ||| || || |||| Sbjct 4230 GACGAACTGAAAACGGCCGGCTCCCGCTTGTTCGATCTCGAGTCGAAGCTTGCCGGCGGC 4289 Query 4273 GCT---GAGAATCCTGGTGAGAAGAAATCCTTCTCTGAACGGGCTGCTGAAGAGCTTATT 4329 || || || |||| | |||||||| ||| |||| ||||| || ||||| || | Sbjct 4290 ACTCTCGATAACCCTGAAGCCAAGAAATCGTTCGCTGAGCGGGCGGCCGAAGATCTGAAG 4349 Query 4330 AAGTCATGGGACGG---TAAACAGGGCACCTTTGGCGCTAAAACGTTTAACAAGTCACTA 4386 ||| ||| |||| || |||| | | || | | || | |||| | || Sbjct 4350 AAGGGCTGGAACGGCTCTACGTCCGGCAAAGTGGACGTGATTAGCTTCAGCAAGGCTCTC 4409 Query 4387 GGCAGTGACGCTGATTCGGCTGGCTCACTGATCCAGCCTATGCAGATCCCAGGCATCATC 4446 ||| | ||| | ||| ||||| | || ||||||| ||||| ||| ||||| || Sbjct 4410 GGCGCAGGCGCCGCTTCTGCTGGTGCGTTGGTCCAGCCCCAGCAGAACCCCGGCATTCTC 4469 Query 4447 ATGCCAGGCCTGCGCCGTCTTACCATTCGTGATCTGCTGGCTCAGGGCCGC---ACTTCC 4503 ||||| ||||||||||| || ||||| ||||| |||||||| || || ||| |||||| Sbjct 4470 ATGCCCGGCCTGCGCCGGCTGACCATCCGTGACCTGCTGGCGCAAGGTCGCACGACTTCC 4529 Query 4504 AGTAACGCTCTGGAATATGTGCGTGAAGAGGTGTTTACCAATAACGCCGACGTGGTGGCA 4563 |||| | || || ||||| || | || || | ||| | ||||| ||| || Sbjct 4530 ---GACGCCATCGAGTACGTGCGCGAGAACGTATTCATCAACAGCGCCGCTCCGGTCGCC 4586 Query 4564 GAGAAAGCACTGAAGCCAGAATCGGATATCACCTTCAGCAAACAAACCGCGAACGTGAAG 4623 ||| | |||||||| || || | | ||||||| ||| |||| || ||||| ||| Sbjct 4587 GAGGGCACGCTGAAGCCCGAGTCCAACCTGACCTTCACCAAGGAAACGGCCAACGTCAAG 4646 Query 4624 ACCATCGCGCACTGGGTGCAGGCATCACGTCAGGTGATGGATGATGCGCCAATGCTTCAG 4683 || | || |||||| | ||||| || || ||| | ||| ||| || || ||||| | Sbjct 4647 ACGCTGGCTCACTGGATTCAGGCTTCTCGCCAGATCATGTCTGACGCTCCGATGCTGGAA 4706 Query 4684 TCCTACATTAACAACCGCCTCATGTACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTG 4743 ||||| | ||| ||||| ||| || |||| || ||||| || ||||| || Sbjct 4707 TCCTATGTGAACGGTCGCCTGTTGTTTGGTCTGGACTTGGTCGAAGAAGGGCAGCTTCTC 4766 Query 4744 AACGGCGACGGTACCGGGGATAACCTGGAAGGGCTGAACAAAGTGGCAACCGCCTATGAC 4803 |||||||| || ||||| || |||||| || ||||||||||| || |||||||| ||| Sbjct 4767 AACGGCGATGGCACCGGTGACAACCTGATCGGCCTGAACAAAGTCGCGACCGCCTACGAC 4826 Query 4804 ACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATCGCTCACGCTATTTATCAG 4863 || |||| ||||||||||||||||| ||||||||| || || ||||| || | ||| Sbjct 4827 ACTACGCTCAATGCCACCGGCGACACTCGCGCTGACCAGATTGCACACGCGATCTTCCAG 4886 Query 4864 GTGACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTCCTGAACCCGCGCGACTGGCACAAC 4923 | ||| || |||||| ||||| || | || ||||||| |||||||||||| | Sbjct 4887 ACCAGCGAATCCGAGTTCGAGGCTTCGGGCCTGATCTTGAACCCCCGCGACTGGCACGCC 4946 Query 4924 ATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCATTCACC 4983 |||||| ||||||||||| ||| || || || ||||| || || ||| ||| ||| || Sbjct 4947 ATCGCGCTGCTGAAAGACGGTGATGGTCGTTACATCTTTGGCGGCCCTGCGGCGTTCGCC 5006 Query 4984 AGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTT 5043 || |||||||||| | || || ||| | || || || ||||| || || || Sbjct 5007 GCCAAGGTCATGTGGGGGCTTCCTGTTGTTGCCACCAAAGCCCAGGCACAGGGAACTTTC 5066 Query 5044 ACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGGGATCGCATGGATGCCACCGTGGAA 5103 || || ||||| ||||| ||||| || ||| ||||||| |||||||| || || | || Sbjct 5067 ACTGTTGGCGGCTTCGACATGGCTTCGCAGATCTGGGACCGCATGGACGCGACTATCGAG 5126 Query 5104 GTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAG 5163 | ||| | || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5127 ATCAGCAACCAGGATCGCGACAACTTCGTGAAAAACATGCTGACCATCCTGTGCGAAGAG 5186 Query 5164 CGTCTGGCGCTGGCGCATTATCGCCCGACAGCAATCATCAAGGGCACCTTC 5214 || |||||| | | || ||||| || || ||||||||||| ||| | ||| Sbjct 5187 CGCCTGGCGGTTACCCACTATCGTCCTACCGCAATCATCAAAGGCGCTTTC 5237 >seq3087926 Length=6391 Score = 122 bits (134), Expect = 2e-23 Identities = 322/484 (67%), Gaps = 12/484 (2%) Strand=Plus/Minus Query 11919 GATCCGTCACTGGATGAATGCAACGGAACGCTGACGGCCTGCAAACTTCGGTTCGGTGAA 11978 |||||| | |||| | ||||| || ||| || ||||||| | || ||||| || Sbjct 5396 GATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGATTCGGCGAG 5337 Query 11979 AACAACGAACTCTCGTTTGGTGGGTTCCCGGGTACGTCGCTGAT---CAGGAGTTGA-TA 12034 ||||||||||| || ||||| || ||||| | ||| || || | |||| ||| | Sbjct 5336 AACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCCCGGAGCTGACCA 5277 Query 12035 TGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAGT 12094 |||| || | | ||| | || || ||||||||| || | || ||||| || |||| Sbjct 5276 TGCGCAAGCACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGTATCCGCGAGAGT 5217 Query 12095 GTTGCGGCGTGGTGGCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCTCG 12154 | |||||| || || | | |||| | |||| || || || || | ||| | | Sbjct 5216 GCTGCGGCCTGCTGTTGGCCGTGGGCCGCGCGCAGAAGTACTTCCCGTGCCGGAACATAG 5157 Query 12155 CTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGACT 12214 | | ||||||| ||| | || | || || || ||||| || || || || |||| Sbjct 5156 CCAAGGAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTACGCCGCGGCGGAAGACT 5097 Query 12215 GGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACTACGCAGCCGAGCGAAC 12274 ||| |||||||| |||||| ||| ||||| |||||||| | |||| | | || Sbjct 5096 TGGGCGAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCACCA-GCAG--GCCCTCAC 5040 Query 12275 TGGATAA---AGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCGG 12331 | || | || || || || ||| ||| || ||||| || || ||||| | Sbjct 5039 CGCATGACTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCACATCCTGTCTTGGCCCG 4980 Query 12332 AGGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTTT 12390 |||| || | ||||| || ||| ||| | || || ||| ||||| |||| ||||| Sbjct 4979 AGGGTGACTGGCGCACGATTACGCCGGCGGGTAGCAC-GCCGCTGCTCAAGCGCCCGTTC 4921 Query 12391 GTGC 12394 |||| Sbjct 4920 GTGC 4917 >seq3087822 Length=6084 Score = 114 bits (126), Expect = 3e-21 Identities = 301/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 11949 CTGACGGCCTGCAAACTTCGGTTCGGTGAAAACAACGAACTCTCGTTTGGTGGGTTCCCG 12008 ||| || ||||||| | || ||||| |||||||||||||| || || ||||| ||||| Sbjct 2082 CTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTCGGTGGATTCCCC 2023 Query 12009 GGTACGTCGCTGA---TCAGGAGTTGA-TATGCGTCAGAAAACCATCGATGCGATTATGG 12064 | || |||| || |||| ||| |||||| || | | ||| | || ||| || Sbjct 2022 GCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTGCCGCTATTCAGG 1963 Query 12065 CGCATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGCAAAAGAGCCGGG 12124 |||| || || || |||||||| || || || ||||| || || | | |||| | Sbjct 1962 CGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGGCCGTGGGCCGCG 1903 Query 12125 TAGAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAACATTTTCACCTGT 12184 |||| || || || || | ||| |||| || ||||||| ||| | || | || Sbjct 1902 CTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCGAAGAGTTCAAGCTCG 1843 Query 12185 CGCCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGTC 12244 || || | ||| || || || ||||||| ||| |||||||| || || ||| | Sbjct 1842 ATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCGGTATAGTCCACTCAC 1783 Query 12245 ACCCTGACGCCACTACGCAGCC---GAGCGAACTGGATAAAGCGCAATGCGACGCAACGC 12301 |||| ||||| || | || ||| | || || || || || || || ||| Sbjct 1782 ACCCGGACGCAACCA-GCCGCCCATCACCGCAC--GACCTTGCCATGTGTGAGGCCACGG 1726 Query 12302 TTTTACCCTGGCATATTGTGAGCTGGCCGGAGGGGGATTTACGCACCATCCAGCC-GCGC 12360 | |||||||||||| | ||||| ||||| || | ||||| ||| ||| || Sbjct 1725 CCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACGATCACGCCAACGG 1666 Query 12361 GGAGAACTGCCACTGCTGGAGCGTCCGTTTGT 12392 | | || ||| ||||| |||| ||||| || Sbjct 1665 GCACCAC-GCCGCTGCTCAAGCGGCCGTTCGT 1635 >seq3088057 Length=7030 Score = 96.9 bits (106), Expect = 9e-16 Identities = 201/297 (68%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 14660 AACCCTGCGTGGATTTTTTACGACCTGGTTGTTT---CTGACCGGTTCGGCCTTGGGCAC 14716 |||||||||||| | ||||| |||||||| | || || | |||||| || | Sbjct 5648 AACCCTGCGTGGGTGTTTTATGACCTGGTGCTGCACCCTTAC---TACGGCCTCGGCGAT 5704 Query 14717 CGTTTGACCGCTGCGAATATTGATAAATGGACGCTTTATCAGGTTGCTCAGTATTGTGAT 14776 || | || ||| ||||| ||| ||||||||| | || || || || ||| Sbjct 5705 CGCATCGATGCCACGATGGTTGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGAT 5764 Query 14777 CAGATGGTACCAGACGGCAAAGGGGGCAATGGTACAGAACCACGTTATACCTGCAACGTG 14836 |||||||| || || || ||||| ||| ||| || || || | |||||||||| || Sbjct 5765 CAGATGGTGCCGGATGGAAAAGGCGGC-ATG-----GAGCCGCGCTTTACCTGCAACCTG 5818 Query 14837 TACATTCAGGACCGGAACGACGCCTACACAGTCCTGCGTGATTTTGCCGCTATCTTCCGT 14896 ||| | || | | | ||| |||||| | || |||| ||| | || | ||||| | Sbjct 5819 TACCTGCAAAAGCAGGCCGAGGCCTACGCGGTGCTGCAGGATCTGGCATCGATCTTTCAC 5878 Query 14897 GGCATGACCTACTGGGGCGGGGATCAGATTGTGGCCCTGGCTGACATGCCGCGCGAT 14953 || || ||||||||| ||| ||||| |||| | || || |||||| ||||| Sbjct 5879 GGTCTGGCCTACTGGGACGGCAGCCAGATCGTGGTCAACGCCGATATGCCGGGCGAT 5935 >seq3088451 Length=13260 Score = 84.2 bits (92), Expect = 5e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 14451 GCTTCACCGAGGTGATTGACGCCAAACTGCGCTACCCGAACACCGCGCTGCTCTACGTCG 14510 ||| |||| ||||||| ||||| || ||||||||||| |||||||||||||| | ||||| Sbjct 11818 GCTACACCCAGGTGATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCG 11877 Query 14511 AATTCGACTCAAGCCAGTTCA 14531 | |||||| | ||||||| Sbjct 11878 AGTTCGACGCCGAGCAGTTCA 11898 >seq347631 Length=610 Score = 80.6 bits (88), Expect = 7e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 14423 AAGATCGGCGACACGATGATGCT-GCAGAGCTTCACCGAGGTGATTGACGCCAAACTGCG 14481 || ||| |||||||||| | | || | ||||||| |||||||| |||||||| | || Sbjct 530 AAAATCTCCGACACGATGCAGATTGCCG-GCTTCACAGAGGTGATCGACGCCAAGATCCG 472 Query 14482 CTACCCGAACACCGCGCTGCTCTACGTCGAATT 14514 ||||||||||||||| |||||||| |||| || Sbjct 471 TTACCCGAACACCGCGTTGCTCTACATCGAGTT 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125376995063104