Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq3087926 141 3e-29 seq3087822 114 4e-21 seq307661 86.0 2e-12 >seq3087926 Length=6391 Score = 141 bits (156), Expect = 3e-29 Identities = 548/837 (65%), Gaps = 33/837 (4%) Strand=Plus/Minus Query 13459 TCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAGTGAGTATCCACGACA 13518 || ||||||| || ||||||| || || |||||| || || | | | ||| ||| | Sbjct 5737 TCACAGCGCTGTGCCTGGCGTTCGAGGACCTGCTGAAGTTCAAGCTCACTGTCCGCGAGA 5678 Query 13519 CGCTGGCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATCCCACTGCAGACCCGT 13578 || |||| ||||||||||| || || | ||| |||||||||| ||||||||| || Sbjct 5677 CGTTGGCGCAGTATCTGGATGCAGCGAACTACCCGGAGGGCAATCCGACTGCAGACTCGA 5618 Query 13579 CACAGGAAAAGCTGAAGGTCTTTTATATCGATGCCAGAAG--CACCGA-GACGGATGAAG 13635 | ||||| |||| || ||| || ||||| ||||||| || ||| ||||| || | Sbjct 5617 CCCAGGAGGCGCTGGAGATCTGGTACATCGA--CCAGAAGACCAGCGAGGACGG-CGAGG 5561 Query 13636 TTGTCGAATTTACGCTTTCCAGTCC-GATG-GATTTACAGGGCCAGATGATACCCACGCG 13693 || | | ||| || ||| | || ||| ||| ||| | ||| ||| Sbjct 5560 CGGTGGTCTGGGAGCTGTCGTCTCCTGGTGAGATCGACA--ACCATGGACTTCCCGGGCG 5503 Query 13694 GCAGCTGCATTCGTTATGCAGCTGGTGCATCCGGAACAA--GTACCGGACCGGCGACGGC 13751 ||| || |||| ||| |||| ||| || ||| || | || | || | | Sbjct 5502 CCAGATGACGACGTTCTGCCACTGGGCCAT---GACCAATGGTTACCGAGGGCCG--GAC 5448 Query 13752 TGCGACTATGCCGGAACGCGCTAT-TTCGACAAAAACAATAATCCGGTTGACGATCCCTC 13810 |||| ||| |||| || || || |||||| | | | || || || ||||| | Sbjct 5447 TGCGGCTACACCGGCGCG-GCCATGTTCGACGACGAAGACAACCCCACGGATGATCCGGC 5389 Query 13811 GCTGGATGTCTGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGA 13870 |||| ||||| ||| ||| || |||||||| | || ||| || | |||||| Sbjct 5388 CAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAACAACGA 5329 Query 13871 GCTGCCGTTCGGTGGTTTCCCCG--GTACATCTC-TTATCAGGAGTTGA-TATGCGCCAG 13926 ||| | || || || ||||||| || |||| || | |||| ||| |||||| || Sbjct 5328 ACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCCCGGAGCTGACCATGCGCAAG 5269 Query 13927 AAAACCATTGATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGCGAGTGCTGCGGC 13986 | | ||||| |||||| ||| || || || |||| |||||||| |||||||||||| Sbjct 5268 CACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGTATCCGCGAGAGTGCTGCGGC 5209 Query 13987 ---GTGGTGGCACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCA 14043 || |||| | |||| | || || || || || || || | || Sbjct 5208 CTGCTGTTGGCCGTG---GGCCGCGCGCAGAAGTACTTCCCGTGCCGGAACATAGCCAAG 5152 Query 14044 GAGCCGACTGAACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGG 14103 ||||||| ||| | || | || |||||| || ||||| ||||| ||||||| ||| Sbjct 5151 GAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTACGCCGCGGCGGAAGACTTGGGC 5092 Query 14104 ACCGTGGTGGCCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGA 14162 ||| | | ||| || ||| || || || || || | ||||||| | || || Sbjct 5091 GAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCACCA-GCAGGCCCTCACCGCATGA 5033 Query 14163 TAAGGCACAGTGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGA 14222 ||| |||||| || ||| |||| ||||| || || ||||| ||||| || Sbjct 5032 CTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCACATCCTGTCTTGGCCCGAGGGTGA 4973 Query 14223 TTTACGTACCATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGC 14278 | || || ||| ||| ||||| ||| ||| |||| |||| |||||||||| Sbjct 4972 CTGGCGCACGATTACGCC-GGCGGGTAGCACGCCGCTGCTCAAGCGCCCGTTCGTGC 4917 >seq3087822 Length=6084 Score = 114 bits (126), Expect = 4e-21 Identities = 328/495 (66%), Gaps = 16/495 (3%) Strand=Plus/Minus Query 13821 TGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTC 13880 ||||| ||| ||| || |||||||| | || ||| || | |||||| ||| | ||| Sbjct 2094 TGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTC 2035 Query 13881 GGTGGTTTCCCCGGTACATCTCTTAT---CAGGAGTTGA-TATGCGCCAGAAAACCATTG 13936 ||||| ||||||| || || || | |||| ||| ||||||| || | | ||||| Sbjct 2034 GGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTG 1975 Query 13937 ATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGCGAGTGCTGCGG---CGTGGTGG 13993 || || ||| ||||| || ||||||||||||||||| |||||||| || ||| Sbjct 1974 CCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGG 1915 Query 13994 CACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTG 14053 | | |||| | | || || || || || || || |||| | ||||||| | Sbjct 1914 CCGTG---GGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCG 1858 Query 14054 AACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGGACCGTGGTGG 14113 || | || | || ||||| | ||||| |||||||| |||| ||| ||| | | Sbjct 1857 AAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCG 1798 Query 14114 CCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCACAG 14172 || || ||| || || || || || | || | ||| | || || || | Sbjct 1797 GTATAGTCCACTCACACCCGGACGCAACCA-GCCGCCCATCACCGCACGACCTTGCCATG 1739 Query 14173 TGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACC 14232 ||||| || ||| |||||||||||||| | ||||| ||||| || | || || Sbjct 1738 TGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACG 1679 Query 14233 ATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGCTTGGCCACTTCGA 14291 || |||| |||| | | ||| |||| |||| |||||||| | || || || Sbjct 1678 ATCACGCCA-ACGGGCACCACGCCGCTGCTCAAGCGGCCGTTCGTACACGGGGCCTGGGA 1620 Query 14292 TTGCTGG--GGTCTG 14304 ||||||| |||||| Sbjct 1619 TTGCTGGCAGGTCTG 1605 >seq307661 Length=865 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 13464 GCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAGTGAGTATCCACGACACGCTG 13523 ||||| || ||||||| || || ||||| || ||| | | | ||| ||| || ||| Sbjct 660 GCGCTGTGCCTGGCGTTCGAGGACATGCTGAAGTTCAAACTCACTGTCCGCGAGACTCTG 719 Query 13524 GCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATCCCACTGCAGACCCGTCACAG 13583 || ||||| ||||| || || | ||| |||||||||| |||||||||||| | ||| Sbjct 720 GCGCAGTACCTGGATGCAGCGAACTACCCGGAGGGCAATCCGACTGCAGACCCGACCCAG 779 Query 13584 GAAAAGCTGAAGGTCTTTTATATCGATGCCAGAA 13617 || |||| || ||| || ||||| |||||| Sbjct 780 GAGGCGCTGGAGATCTGGTACATCGA--CCAGAA 811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139729750988896