Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019717.1
Length=45366
Score E
Sequences producing significant alignments: (Bits) Value
seq3087926 141 3e-29
seq3087822 114 4e-21
seq307661 86.0 2e-12
>seq3087926
Length=6391
Score = 141 bits (156), Expect = 3e-29
Identities = 548/837 (65%), Gaps = 33/837 (4%)
Strand=Plus/Minus
Query 13459 TCTCAGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAGTGAGTATCCACGACA 13518
|| ||||||| || ||||||| || || |||||| || || | | | ||| ||| |
Sbjct 5737 TCACAGCGCTGTGCCTGGCGTTCGAGGACCTGCTGAAGTTCAAGCTCACTGTCCGCGAGA 5678
Query 13519 CGCTGGCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATCCCACTGCAGACCCGT 13578
|| |||| ||||||||||| || || | ||| |||||||||| ||||||||| ||
Sbjct 5677 CGTTGGCGCAGTATCTGGATGCAGCGAACTACCCGGAGGGCAATCCGACTGCAGACTCGA 5618
Query 13579 CACAGGAAAAGCTGAAGGTCTTTTATATCGATGCCAGAAG--CACCGA-GACGGATGAAG 13635
| ||||| |||| || ||| || ||||| ||||||| || ||| ||||| || |
Sbjct 5617 CCCAGGAGGCGCTGGAGATCTGGTACATCGA--CCAGAAGACCAGCGAGGACGG-CGAGG 5561
Query 13636 TTGTCGAATTTACGCTTTCCAGTCC-GATG-GATTTACAGGGCCAGATGATACCCACGCG 13693
|| | | ||| || ||| | || ||| ||| ||| | ||| |||
Sbjct 5560 CGGTGGTCTGGGAGCTGTCGTCTCCTGGTGAGATCGACA--ACCATGGACTTCCCGGGCG 5503
Query 13694 GCAGCTGCATTCGTTATGCAGCTGGTGCATCCGGAACAA--GTACCGGACCGGCGACGGC 13751
||| || |||| ||| |||| ||| || ||| || | || | || | |
Sbjct 5502 CCAGATGACGACGTTCTGCCACTGGGCCAT---GACCAATGGTTACCGAGGGCCG--GAC 5448
Query 13752 TGCGACTATGCCGGAACGCGCTAT-TTCGACAAAAACAATAATCCGGTTGACGATCCCTC 13810
|||| ||| |||| || || || |||||| | | | || || || ||||| |
Sbjct 5447 TGCGGCTACACCGGCGCG-GCCATGTTCGACGACGAAGACAACCCCACGGATGATCCGGC 5389
Query 13811 GCTGGATGTCTGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGA 13870
|||| ||||| ||| ||| || |||||||| | || ||| || | ||||||
Sbjct 5388 CAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTGCGATTCGGCGAGAACAACGA 5329
Query 13871 GCTGCCGTTCGGTGGTTTCCCCG--GTACATCTC-TTATCAGGAGTTGA-TATGCGCCAG 13926
||| | || || || ||||||| || |||| || | |||| ||| |||||| ||
Sbjct 5328 ACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCCCGGAGCTGACCATGCGCAAG 5269
Query 13927 AAAACCATTGATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGCGAGTGCTGCGGC 13986
| | ||||| |||||| ||| || || || |||| |||||||| ||||||||||||
Sbjct 5268 CACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGTATCCGCGAGAGTGCTGCGGC 5209
Query 13987 ---GTGGTGGCACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCA 14043
|| |||| | |||| | || || || || || || || | ||
Sbjct 5208 CTGCTGTTGGCCGTG---GGCCGCGCGCAGAAGTACTTCCCGTGCCGGAACATAGCCAAG 5152
Query 14044 GAGCCGACTGAACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGG 14103
||||||| ||| | || | || |||||| || ||||| ||||| ||||||| |||
Sbjct 5151 GAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTACGCCGCGGCGGAAGACTTGGGC 5092
Query 14104 ACCGTGGTGGCCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGA 14162
||| | | ||| || ||| || || || || || | ||||||| | || ||
Sbjct 5091 GAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCACCA-GCAGGCCCTCACCGCATGA 5033
Query 14163 TAAGGCACAGTGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGA 14222
||| |||||| || ||| |||| ||||| || || ||||| ||||| ||
Sbjct 5032 CTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCACATCCTGTCTTGGCCCGAGGGTGA 4973
Query 14223 TTTACGTACCATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGC 14278
| || || ||| ||| ||||| ||| ||| |||| |||| ||||||||||
Sbjct 4972 CTGGCGCACGATTACGCC-GGCGGGTAGCACGCCGCTGCTCAAGCGCCCGTTCGTGC 4917
>seq3087822
Length=6084
Score = 114 bits (126), Expect = 4e-21
Identities = 328/495 (66%), Gaps = 16/495 (3%)
Strand=Plus/Minus
Query 13821 TGCAACGGCACGCTGACGGCCTGCAAGCTCCGGCACGGAGACAGCAACGAGCTGCCGTTC 13880
||||| ||| ||| || |||||||| | || ||| || | |||||| ||| | |||
Sbjct 2094 TGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAACGAACTGTCCTTC 2035
Query 13881 GGTGGTTTCCCCGGTACATCTCTTAT---CAGGAGTTGA-TATGCGCCAGAAAACCATTG 13936
||||| ||||||| || || || | |||| ||| ||||||| || | | |||||
Sbjct 2034 GGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGCAAGCACATCATTG 1975
Query 13937 ATGCCATCATGGCACACGCTGCAGCGGAATATCCGCGCGAGTGCTGCGG---CGTGGTGG 13993
|| || ||| ||||| || ||||||||||||||||| |||||||| || |||
Sbjct 1974 CCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGCGGGCTGCTGCTGG 1915
Query 13994 CACAGAAAAGCCGGGTTGAGCGCTATTTTCCCTGTCGTAATCTCGCAGCAGAGCCGACTG 14053
| | |||| | | || || || || || || || |||| | ||||||| |
Sbjct 1914 CCGTG---GGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCACGGAGCCGAGCG 1858
Query 14054 AACATTTTCACCTGTCCCCCGAAGATTACGCAGCGGCAGAAGACTGGGGGACCGTGGTGG 14113
|| | || | || ||||| | ||||| |||||||| |||| ||| ||| | |
Sbjct 1857 AAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGGGCGAGGTGATCG 1798
Query 14114 CCATTGTTCACAGCCATCCTGATGCGACGACGCAGGCCAGC-GAGCTGGATAAGGCACAG 14172
|| || ||| || || || || || | || | ||| | || || || |
Sbjct 1797 GTATAGTCCACTCACACCCGGACGCAACCA-GCCGCCCATCACCGCACGACCTTGCCATG 1739
Query 14173 TGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCAGAGGGGGATTTACGTACC 14232
||||| || ||| |||||||||||||| | ||||| ||||| || | || ||
Sbjct 1738 TGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCGAGGGCGACATGCGCACG 1679
Query 14233 ATTCAGCCACGCGGGGAGC-TGCCATTGCTGGAGCGTCCGTTCGTGCTTGGCCACTTCGA 14291
|| |||| |||| | | ||| |||| |||| |||||||| | || || ||
Sbjct 1678 ATCACGCCA-ACGGGCACCACGCCGCTGCTCAAGCGGCCGTTCGTACACGGGGCCTGGGA 1620
Query 14292 TTGCTGG--GGTCTG 14304
||||||| ||||||
Sbjct 1619 TTGCTGGCAGGTCTG 1605
>seq307661
Length=865
Score = 86.0 bits (94), Expect = 2e-12
Identities = 112/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 13464 GCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAAGTGAGTATCCACGACACGCTG 13523
||||| || ||||||| || || ||||| || ||| | | | ||| ||| || |||
Sbjct 660 GCGCTGTGCCTGGCGTTCGAGGACATGCTGAAGTTCAAACTCACTGTCCGCGAGACTCTG 719
Query 13524 GCACAGTATCTGGACGCCAGAAATTTTCCGCAGGGCAATCCCACTGCAGACCCGTCACAG 13583
|| ||||| ||||| || || | ||| |||||||||| |||||||||||| | |||
Sbjct 720 GCGCAGTACCTGGATGCAGCGAACTACCCGGAGGGCAATCCGACTGCAGACCCGACCCAG 779
Query 13584 GAAAAGCTGAAGGTCTTTTATATCGATGCCAGAA 13617
|| |||| || ||| || ||||| ||||||
Sbjct 780 GAGGCGCTGGAGATCTGGTACATCGA--CCAGAA 811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139729750988896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |