Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019724.1 Length=43741 Score E Sequences producing significant alignments: (Bits) Value seq3088451 98.7 3e-16 >seq3088451 Length=13260 Score = 98.7 bits (108), Expect = 3e-16 Identities = 212/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 17570 ATCGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCCAAA 17629 |||||||| ||||| ||||| ||||||||| ||||||| |||||||||||| | Sbjct 11832 ATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAG 11891 Query 17630 GCGTTCCAGAACATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTTCTAATACCG 17689 |||| |||||| ||| |||| || | ||||| || | ||| | | ||| Sbjct 11892 CAGTTCACGAACATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCG 11951 Query 17690 AACAACTACGACCCGATTAATCATACCTATTCCGGGGACTGGGATGGTACGTTTAAACGC 17749 | ||||||||| ||| | | ||||| ||||| | |||||| || || | ||| Sbjct 11952 AGCAACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAG 12011 Query 17750 GCCTGGACGGATAACCCTGCGTGGCACTGGTACGACATTTGTATTACTGAGCGCTTCGGC 17809 |||||||| ||||||| || ||| | |||| ||| || | || || || || Sbjct 12012 GCCTGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGT 12071 Query 17810 CTCGGTCGGCGTATCAAACCGCAAATGCTAAATCGATACGCGCTCTACCAGATTGCGCAG 17869 || || || || ||||| ||| ||| | | | | ||| |||| || || ||| Sbjct 12072 CTGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAG 12131 Query 17870 CGCTGCGATCAGTTGGT 17886 ||||| |||||||| Sbjct 12132 TATTGCGACCAGTTGGT 12148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134720466543146