Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq3088488 170 7e-38 seq3088273 136 2e-27 seq295506 93.3 2e-14 seq277625 89.7 2e-13 >seq3088488 Length=17142 Score = 170 bits (188), Expect = 7e-38 Identities = 522/790 (66%), Gaps = 34/790 (4%) Strand=Plus/Plus Query 3165 ATGGTCAAGATCATCGCGTTCGCGATCTTCGCGACGCGGCGCCAGGAGGAGATCACGGCG 3224 ||| ||||| || | | || || | ||| | || || || | ||| || || || Sbjct 875 ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAACCCGC 934 Query 3225 ATCCGCTGGGACGACCTGAACGAGGA-GGAGAGCACGCAGCTCGTGCGCGACGTGAAGCA 3283 |||||||||| |||| | ||||| || ||| | ||| |||||||| ||||| | Sbjct 935 ATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGT-GCTGGTGCGCGATATGAAGAA 993 Query 3284 CCCGCGCAAGAAGATCGGCAACGATCAGGAATCGCGGCTCACGCC---CGAGGCGCTGGC 3340 ||| || |||| ||||||||||| | | | | | ||| ||| ||| |||| Sbjct 994 CCCTGGCCAGAAAATCGGCAACGAC---GTTTGGTGCTACCTGCCAGACGAAGCG-TGGC 1049 Query 3341 -GATCATCAAGTCGATGCCGCGCACGCACGACCGCATCTTCCCGTACACGACCGACGCGA 3399 |||| || || | |||||| || ||| ||||||||| |||| | || | | Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109 Query 3400 TCAGCGCGCAGTTCACTCGCGCGTGCGACTGGCTCGAGATAGAGGACTTGCGGTTTCACG 3459 || | || | | || ||| | | || || || | ||| ||| || |||| Sbjct 1110 TCTCCACGTCCTGGGCCAAAGCCTGCAAGTTCCTGGAAATTGCGGATCTGCACTTCCACG 1169 Query 3460 ACCTGCGCCGGGCCGGCGTGACGCGCCTATTCGAGATGGGCTGGAACATTCCCGACGTGG 3519 |||| |||| | ||||| | ||||| || || |||| |||| |||| || ||||| Sbjct 1170 ACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAATGGACTGGGACATCCCACGCGTGG 1229 Query 3520 CGAAGGTCAGCCTG--CACCGCGACTGGAACATGCTGCGCCGATACACGAACCTGAAGGG 3577 ||| || | | | ||||| || ||||| || | || ||||| ||||| || Sbjct 1230 CGAGTGT--GTCGGGCCACCGGGATTGGAATTCAATGAGGCGTTACACCCACCTGCGCGG 1287 Query 3578 CAAGGGCGATCGGTACGCGGGGTGGAAGTGG-ACGCA--GATCGCGATCGATCAGCCGGT 3634 |||||| ||||| || | ||| ||| | ||| ||| | ||| || | ||| || Sbjct 1288 CAAGGGTGATCGTTATGTGGGCTGGGAATGGCACGAAAAGATACTGAGGGC---GCCCGT 1344 Query 3635 GCACCCGC-CGCGGCCGAAGAAGAAG-GGCGAAGCCGTCAGCGCGA------CCGT--AG 3684 || | | ||| || ||| || | ||| | || ||||| |||| || Sbjct 1345 CCAACTGGGCGCCGCATCAGA-GAGGTGGCTTAAACG---GCGCGTTTTATCCCGTTGAG 1400 Query 3685 CTGTTGCAGCTCCCTCGCCGCATCCTCGCGCCGCGCGTCGAGATACGCGGCAAGGTCGGC 3744 ||| | | ||| || | || | ||||| || |||||| || || || ||||||| Sbjct 1401 CTGGTTGTGTTCCTTCACAGCGGCGGCGCGCTGCAAGTCGAGGTAGGCAGCGAGGTCGGT 1460 Query 3745 AAGGTGGACGCCCTTCGCGCACTTCTGCGAACGCTCCATCCGCACGATCGGCAAGGTGAT 3804 ||||||| ||| || || ||||||| |||||||||| ||| ||||| |||| Sbjct 1461 GAGGTGGATGCCTTTAGCCGACTTCTGGCTCGGCTCCATCCGGGTGATGGGCAACTTGAT 1520 Query 3805 GTCGCCGTCGAGTACCTTCCGCTGGAGCTTTTCGGGAGACAGGTGCGCGAAGTAGTCGCG 3864 | ||| | ||||| ||||||| | | || || | |||||||| ||||||||| || Sbjct 1521 CTGACCGCTCATCACCTTGCGCTGGAACATGTCCGGGGTCAGGTGCGTGAAGTAGTCCCG 1580 Query 3865 GCACACCAGATCGAGGGGGATGACGGCACGGCCGTCGTATTGGGCCATCAGGAGGAAAGC 3924 ||||||||| || || | ||| | || |||| ||||||||||||||||||| || || Sbjct 1581 GCACACCAGCTCCAGCGAGATAATCGCCTGGCCATCGTATTGGGCCATCAGGATAAAGGC 1640 Query 3925 GGTGTTCATG 3934 ||||||||| Sbjct 1641 TGTGTTCATG 1650 >seq3088273 Length=8614 Score = 136 bits (150), Expect = 2e-27 Identities = 296/431 (69%), Gaps = 28/431 (6%) Strand=Plus/Plus Query 24427 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24486 ||| ||| |||||||||| || |||||||| || ||||| || ||| | |||||| || Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358 Query 24487 GCTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGA-ACCGCG 24545 | | || ||| ||||| | || || ||||| | | ||||| || | || | Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415 Query 24546 AGACGGCCGAGGCGATCTTTC-GGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24604 |||| ||| ||| |||| |||| |||||||| | |||||||||||| ||||| || Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473 Query 24605 GCGCTGCGCGACGCGATGCCGCTCGCCAACTGCACGCAGTC--CGAGATGCTGTTCGGGC 24662 | ||| |||| || | ||| ||| | | |||| | | |||| || ||||| | Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACG-ACGCGGCCGGCGAGCTGGTGTTCAG-- 3529 Query 24663 ACAACAACAGCAGCATCCGCGTCGCG-----ACGTCGGTGCGCGGCGGCACGATCCACCG 24717 ||| || | | ||| | || || ||| | || ||||||||| | | | Sbjct 3530 ----CAAGGGCGG--TTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTA 3583 Query 24718 CCTGCACGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24777 ||||||||| |||||||||||||||||||| ||| || |||| ||||| |||||| Sbjct 3584 CCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGAT 3643 Query 24778 CGTGACCGGCTCGATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACG 24835 ||| |||||| | || ||| || |||| | | ||| | ||||||||||||| Sbjct 3644 CGTCACCGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACG 3701 Query 24836 GCCGAGGGCCG 24846 || || ||||| Sbjct 3702 GCAGAAGGCCG 3712 >seq295506 Length=3618 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 24428 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24487 |||||| | ||| |||||||| | ||||| |||||||||||| | |||||||||| Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495 Query 24488 CTCGACCACGCGCTGTTCAACGCGAACAGCC-GGTGCGGCATCATCGCCCAGAACC-GCG 24545 || ||| || || ||| | ||||| ||||| | | |||||||| | || | Sbjct 1494 CTGGACGCGGCTCTATTCGA----GTCAGCCAAGTGCGCCCTGATCGCCCACACCCTGAA 1439 Query 24546 AGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGG 24605 ||| ||| || | || ||||| |||||||||| |||||||||||| ||||| | | Sbjct 1438 CGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCCGAAAG 1380 Query 24606 CGCTGCGCGACGCGA 24620 | | |||| ||||| Sbjct 1379 AGATCCGCGCCGCGA 1365 >seq277625 Length=52836 Score = 89.7 bits (98), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 24673 CAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCACGTGTCCGA 24732 |||||||| || |||| ||| | || ||||||||| |||| |||||||| |||||||| Sbjct 29998 CAGCATCCAGGTATCGACCTCGTTCCGGGGCGGCACGCTCCAGCGCCTGCATGTGTCCGA 29939 Query 24733 GTTCGGGAAGATCTG--TGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGACCGGCTCG 24790 |||||| |||||||| || ||| ||| ||||| |||| ||||| ||||| || Sbjct 29938 GTTCGGCAAGATCTGCAAGCTGAG--CCCGGACAAGGCTCAGGAAATCGTCACCGGTGCG 29881 Query 24791 ATCCCGGCCGTG 24802 | ||||||| Sbjct 29880 TTTGAGGCCGTG 29869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193940997919948