Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019917.1
Length=62952
Score E
Sequences producing significant alignments: (Bits) Value
seq3088488 170 7e-38
seq3088273 136 2e-27
seq295506 93.3 2e-14
seq277625 89.7 2e-13
>seq3088488
Length=17142
Score = 170 bits (188), Expect = 7e-38
Identities = 522/790 (66%), Gaps = 34/790 (4%)
Strand=Plus/Plus
Query 3165 ATGGTCAAGATCATCGCGTTCGCGATCTTCGCGACGCGGCGCCAGGAGGAGATCACGGCG 3224
||| ||||| || | | || || | ||| | || || || | ||| || || ||
Sbjct 875 ATGCTCAAGGTCGTGGGCTTTGCTTTGTTCTCCACACGCCGGCTGGATGAAATAACCCGC 934
Query 3225 ATCCGCTGGGACGACCTGAACGAGGA-GGAGAGCACGCAGCTCGTGCGCGACGTGAAGCA 3283
|||||||||| |||| | ||||| || ||| | ||| |||||||| ||||| |
Sbjct 935 ATCCGCTGGGCCGACGTCGACGAGCCTGGCCAGCGGGT-GCTGGTGCGCGATATGAAGAA 993
Query 3284 CCCGCGCAAGAAGATCGGCAACGATCAGGAATCGCGGCTCACGCC---CGAGGCGCTGGC 3340
||| || |||| ||||||||||| | | | | | ||| ||| ||| ||||
Sbjct 994 CCCTGGCCAGAAAATCGGCAACGAC---GTTTGGTGCTACCTGCCAGACGAAGCG-TGGC 1049
Query 3341 -GATCATCAAGTCGATGCCGCGCACGCACGACCGCATCTTCCCGTACACGACCGACGCGA 3399
|||| || || | |||||| || ||| ||||||||| |||| | || | |
Sbjct 1050 AGATCCTCCAGACCATGCCGAAGGCGGGCGAGGACATCTTCCCTTACAGCCCTGAATCTA 1109
Query 3400 TCAGCGCGCAGTTCACTCGCGCGTGCGACTGGCTCGAGATAGAGGACTTGCGGTTTCACG 3459
|| | || | | || ||| | | || || || | ||| ||| || ||||
Sbjct 1110 TCTCCACGTCCTGGGCCAAAGCCTGCAAGTTCCTGGAAATTGCGGATCTGCACTTCCACG 1169
Query 3460 ACCTGCGCCGGGCCGGCGTGACGCGCCTATTCGAGATGGGCTGGAACATTCCCGACGTGG 3519
|||| |||| | ||||| | ||||| || || |||| |||| |||| || |||||
Sbjct 1170 ACCTTCGCCATGAAGGCGTCAGCCGCCTGTTTGAAATGGACTGGGACATCCCACGCGTGG 1229
Query 3520 CGAAGGTCAGCCTG--CACCGCGACTGGAACATGCTGCGCCGATACACGAACCTGAAGGG 3577
||| || | | | ||||| || ||||| || | || ||||| ||||| ||
Sbjct 1230 CGAGTGT--GTCGGGCCACCGGGATTGGAATTCAATGAGGCGTTACACCCACCTGCGCGG 1287
Query 3578 CAAGGGCGATCGGTACGCGGGGTGGAAGTGG-ACGCA--GATCGCGATCGATCAGCCGGT 3634
|||||| ||||| || | ||| ||| | ||| ||| | ||| || | ||| ||
Sbjct 1288 CAAGGGTGATCGTTATGTGGGCTGGGAATGGCACGAAAAGATACTGAGGGC---GCCCGT 1344
Query 3635 GCACCCGC-CGCGGCCGAAGAAGAAG-GGCGAAGCCGTCAGCGCGA------CCGT--AG 3684
|| | | ||| || ||| || | ||| | || ||||| |||| ||
Sbjct 1345 CCAACTGGGCGCCGCATCAGA-GAGGTGGCTTAAACG---GCGCGTTTTATCCCGTTGAG 1400
Query 3685 CTGTTGCAGCTCCCTCGCCGCATCCTCGCGCCGCGCGTCGAGATACGCGGCAAGGTCGGC 3744
||| | | ||| || | || | ||||| || |||||| || || || |||||||
Sbjct 1401 CTGGTTGTGTTCCTTCACAGCGGCGGCGCGCTGCAAGTCGAGGTAGGCAGCGAGGTCGGT 1460
Query 3745 AAGGTGGACGCCCTTCGCGCACTTCTGCGAACGCTCCATCCGCACGATCGGCAAGGTGAT 3804
||||||| ||| || || ||||||| |||||||||| ||| ||||| ||||
Sbjct 1461 GAGGTGGATGCCTTTAGCCGACTTCTGGCTCGGCTCCATCCGGGTGATGGGCAACTTGAT 1520
Query 3805 GTCGCCGTCGAGTACCTTCCGCTGGAGCTTTTCGGGAGACAGGTGCGCGAAGTAGTCGCG 3864
| ||| | ||||| ||||||| | | || || | |||||||| ||||||||| ||
Sbjct 1521 CTGACCGCTCATCACCTTGCGCTGGAACATGTCCGGGGTCAGGTGCGTGAAGTAGTCCCG 1580
Query 3865 GCACACCAGATCGAGGGGGATGACGGCACGGCCGTCGTATTGGGCCATCAGGAGGAAAGC 3924
||||||||| || || | ||| | || |||| ||||||||||||||||||| || ||
Sbjct 1581 GCACACCAGCTCCAGCGAGATAATCGCCTGGCCATCGTATTGGGCCATCAGGATAAAGGC 1640
Query 3925 GGTGTTCATG 3934
|||||||||
Sbjct 1641 TGTGTTCATG 1650
>seq3088273
Length=8614
Score = 136 bits (150), Expect = 2e-27
Identities = 296/431 (69%), Gaps = 28/431 (6%)
Strand=Plus/Plus
Query 24427 CCGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTG 24486
||| ||| |||||||||| || |||||||| || ||||| || ||| | |||||| ||
Sbjct 3299 CCGGAACATCATCCTGAAAGCTCGCCAGCTGGGGTTTACGACGCTGGTGTGCATCGTCCA 3358
Query 24487 GCTCGACCACGCGCTGTTCAACGCGAACAGCCGGTGCGGCATCATCGCCCAGA-ACCGCG 24545
| | || ||| ||||| | || || ||||| | | ||||| || | || |
Sbjct 3359 GTTGGATGCAGCGTTGTTCGAGGCTGCCAA---GTGCGCCTTGATCGCTCACACACTGAA 3415
Query 24546 AGACGGCCGAGGCGATCTTTC-GGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAG 24604
|||| ||| ||| |||| |||| |||||||| | |||||||||||| ||||| ||
Sbjct 3416 CGACG--CGAAGCGCCTTTTCCGGGAAAAGGTGAAATACGCCTACGACAATCTGCCGAAG 3473
Query 24605 GCGCTGCGCGACGCGATGCCGCTCGCCAACTGCACGCAGTC--CGAGATGCTGTTCGGGC 24662
| ||| |||| || | ||| ||| | | |||| | | |||| || ||||| |
Sbjct 3474 GAGCTTCGCGCTGCCAACCCGG-CGCGGAACG-ACGCGGCCGGCGAGCTGGTGTTCAG-- 3529
Query 24663 ACAACAACAGCAGCATCCGCGTCGCG-----ACGTCGGTGCGCGGCGGCACGATCCACCG 24717
||| || | | ||| | || || ||| | || ||||||||| | | |
Sbjct 3530 ----CAAGGGCGG--TTCGCTTTACGTTTCCACCTCGTTCCGTGGCGGCACGCTGCGCTA 3583
Query 24718 CCTGCACGTGTCCGAGTTCGGGAAGATCTGTGCCGAGGCGCCGCTGAAGGCCAAGGAGAT 24777
||||||||| |||||||||||||||||||| ||| || |||| ||||| ||||||
Sbjct 3584 CCTGCACGTATCCGAGTTCGGGAAGATCTGCGCCAAGTTTCCGCACAAGGCGCGGGAGAT 3643
Query 24778 CGTGACCGGCTCGATCCCGGCCGT-GCCGAAGTCGGGCATTC-TGGTCATCGAGTCGACG 24835
||| |||||| | || ||| || |||| | | ||| | |||||||||||||
Sbjct 3644 CGTCACCGGCGCCTTCGAGGCTGTCGCCGCTGAATG--TTTCGTCACCATCGAGTCGACG 3701
Query 24836 GCCGAGGGCCG 24846
|| || |||||
Sbjct 3702 GCAGAAGGCCG 3712
>seq295506
Length=3618
Score = 93.3 bits (102), Expect = 2e-14
Identities = 140/195 (72%), Gaps = 7/195 (4%)
Strand=Plus/Minus
Query 24428 CGCAACGTCATCCTGAAGGCCCGCCAGCTCGGCTTTACCACCCTGATCTGCATCATCTGG 24487
|||||| | ||| |||||||| | ||||| |||||||||||| | ||||||||||
Sbjct 1554 CGCAACCTGATCTTGAAGGCCAGGCAGCTTGGCTTTACCACCGAGTGCTGCATCATCCAA 1495
Query 24488 CTCGACCACGCGCTGTTCAACGCGAACAGCC-GGTGCGGCATCATCGCCCAGAACC-GCG 24545
|| ||| || || ||| | ||||| ||||| | | |||||||| | || |
Sbjct 1494 CTGGACGCGGCTCTATTCGA----GTCAGCCAAGTGCGCCCTGATCGCCCACACCCTGAA 1439
Query 24546 AGACGGCCGAGGCGATCTTTCGGGACAAGGTGAAGTTCGCCTACGACAACCTGCCCGAGG 24605
||| ||| || | || ||||| |||||||||| |||||||||||| ||||| | |
Sbjct 1438 CGAC-GCCAAGCGCCTGTTCCGGGAGAAGGTGAAGTACGCCTACGACAATCTGCCGAAAG 1380
Query 24606 CGCTGCGCGACGCGA 24620
| | |||| |||||
Sbjct 1379 AGATCCGCGCCGCGA 1365
>seq277625
Length=52836
Score = 89.7 bits (98), Expect = 2e-13
Identities = 100/132 (76%), Gaps = 4/132 (3%)
Strand=Plus/Minus
Query 24673 CAGCATCCGCGTCGCGACGTCGGTGCGCGGCGGCACGATCCACCGCCTGCACGTGTCCGA 24732
|||||||| || |||| ||| | || ||||||||| |||| |||||||| ||||||||
Sbjct 29998 CAGCATCCAGGTATCGACCTCGTTCCGGGGCGGCACGCTCCAGCGCCTGCATGTGTCCGA 29939
Query 24733 GTTCGGGAAGATCTG--TGCCGAGGCGCCGCTGAAGGCCAAGGAGATCGTGACCGGCTCG 24790
|||||| |||||||| || ||| ||| ||||| |||| ||||| ||||| ||
Sbjct 29938 GTTCGGCAAGATCTGCAAGCTGAG--CCCGGACAAGGCTCAGGAAATCGTCACCGGTGCG 29881
Query 24791 ATCCCGGCCGTG 24802
| |||||||
Sbjct 29880 TTTGAGGCCGTG 29869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193940997919948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |