Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq289766 161 3e-35 seq3088211 149 2e-31 seq3031070 140 1e-28 >seq289766 Length=704 Score = 161 bits (178), Expect = 3e-35 Identities = 284/410 (69%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 29508 ACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGA 29567 ||||| || |||||||| ||| ||||| | | || |||||||||||||||||||| || Sbjct 54 ACAGTCCTGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGG 113 Query 29568 ATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCT 29627 ||||| || |||||| ||| |||||||| || ||||| ||||||||||| || ||| Sbjct 114 ATGGAGCAACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCT 173 Query 29628 GCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTT 29687 || |||| ||| ||||| ||| | || |||||||| ||| | ||||| |||||| Sbjct 174 GCGAACTACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTT 233 Query 29688 TATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCGCGACTCAGGT 29747 |||||| | || || | || ||| || ||| | | || ||| | | | ||| Sbjct 234 TATCACCTGGCTCATGCGACCGACAAGTACGG-TCAACCAGCATTCACC-CAAGAC-GGT 290 Query 29748 AAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTGGCGTTGTCCGTCGA 29807 |||||| | ||| || || || || || || ||||| || || ||||| || Sbjct 291 GCACCGAAGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGC 350 Query 29808 TATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATAAACCAGCAGAGGTG 29867 || || || || | || || || | || || ||||| ||||| | || || |||||| Sbjct 351 TACGGTGCGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTG 410 Query 29868 GCCCATCTTGATGTTGCCAGAGCATGTGGTACATGCCTCATGAAGCTGGC 29917 | | | | |||| || || || || || || || | |||||||| Sbjct 411 GGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTTAAGCTGGC 460 >seq3088211 Length=8104 Score = 149 bits (164), Expect = 2e-31 Identities = 155/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 29502 GGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAG 29561 ||| | ||||| || ||||| || || ||||| | | || |||||||| ||||| ||| Sbjct 1554 GGCCGCACAGTTCTGGGCCAAGCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAG 1495 Query 29562 GCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACG 29621 ||||| ||||| || |||||| ||| ||||| || | ||||| |||||||||||| Sbjct 1494 GCCCGGATGGAGCAACAGATGCGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACC 1435 Query 29622 CTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCT-GCGCACTGGTAGAGCA 29680 |||| |||||||| ||| |||||| |||| |||| || | ||| |||||| ||||| Sbjct 1434 TTGGCCGCTGACTACTGCGCCCAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCA 1376 Query 29681 TGAGCTTTATCACATCGCCCA 29701 |||||| |||||||| |||| Sbjct 1375 TGAGCTCTATCACATTTCCCA 1355 >seq3031070 Length=905 Score = 140 bits (154), Expect = 1e-28 Identities = 230/328 (70%), Gaps = 3/328 (1%) Strand=Plus/Minus Query 29541 CGTGCCGGCGGATGGCAAAAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCAC 29600 || |||||||| ||||| || ||||| ||||| || |||||| ||| |||||||| || Sbjct 897 CGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCGAC 838 Query 29601 AAGCCGGACTTCATCATCACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGAC 29660 ||||| |||||||||||| ||||| || ||||| ||| || ||| ||| | || Sbjct 837 GTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTGAG 778 Query 29661 TTCTGCGCACTGGTAGAGCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGC 29720 |||||||| ||| | || || ||||| |||||| | || || | || || | || Sbjct 777 TTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAG-TACGC 719 Query 29721 TCACCGAAGTTTTACCGCGACTCAGGTAAGCCGAAGCTTTGCATGCGCGGACATGATGTT 29780 ||| | | || ||| | | | || |||||| | ||| || || || ||| Sbjct 718 TCAACCAGCATTCACC-CAAGAC-GGCGCACCGAAGATCAAGCTGCAGGGCCACGACGTT 661 Query 29781 GAGGAATTCGTTGGCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTA 29840 || || ||||| || || ||||| || ||||| |||||| |||| || || | || || Sbjct 660 GAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTG 601 Query 29841 GATGCGGCAAATAAACCAGCAGAGGTGG 29868 || || ||||| | || || ||||||| Sbjct 600 GACGCTGCAAACAGTCCTGCTGAGGTGG 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146650270115486