Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_019927.1
Length=47611
Score E
Sequences producing significant alignments: (Bits) Value
seq289766 161 3e-35
seq3088211 149 2e-31
seq3031070 140 1e-28
>seq289766
Length=704
Score = 161 bits (178), Expect = 3e-35
Identities = 284/410 (69%), Gaps = 3/410 (1%)
Strand=Plus/Plus
Query 29508 ACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAGGCCCGA 29567
||||| || |||||||| ||| ||||| | | || |||||||||||||||||||| ||
Sbjct 54 ACAGTCCTGGGCCAGGCCGAACAGGTAGCGTTCCGCGCCGGCGGATGGCAAAAGGCTCGG 113
Query 29568 ATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACGCTGGCT 29627
||||| || |||||| ||| |||||||| || ||||| ||||||||||| || |||
Sbjct 114 ATGGAGCAACAGATGCGTGATTGGTTCGGCGACGTGCCGGCTTTCATCATCACTCTTGCT 173
Query 29628 GCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCTGCGCACTGGTAGAGCATGAGCTT 29687
|| |||| ||| ||||| ||| | || |||||||| ||| | ||||| ||||||
Sbjct 174 GCGAACTACTGCGCCCAATGTAGCGACCTTGAGTTCTGCGCGCTGATCGAGCACGAGCTT 233
Query 29688 TATCACATCGCCCAAGAAGTGGATGAGTTTGGCTCACCGAAGTTTTACCGCGACTCAGGT 29747
|||||| | || || | || ||| || ||| | | || ||| | | | |||
Sbjct 234 TATCACCTGGCTCATGCGACCGACAAGTACGG-TCAACCAGCATTCACC-CAAGAC-GGT 290
Query 29748 AAGCCGAAGCTTTGCATGCGCGGACATGATGTTGAGGAATTCGTTGGCGTTGTCCGTCGA 29807
|||||| | ||| || || || || || || ||||| || || ||||| ||
Sbjct 291 GCACCGAAGATCAAGCTGCAGGGCCACGACGTCGAAGAGTTCGTCGGTGTCGTCCGCCGC 350
Query 29808 TATGGCGCAAGCGCTGATGTCCAGGAATTAGTAGATGCGGCAAATAAACCAGCAGAGGTG 29867
|| || || || | || || || | || || ||||| ||||| | || || ||||||
Sbjct 351 TACGGTGCGAGTCCCGACGTTCAAGCGTTGGTGGATGCTGCAAACAGTCCTGCTGAGGTG 410
Query 29868 GCCCATCTTGATGTTGCCAGAGCATGTGGTACATGCCTCATGAAGCTGGC 29917
| | | | |||| || || || || || || || | ||||||||
Sbjct 411 GGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTTAAGCTGGC 460
>seq3088211
Length=8104
Score = 149 bits (164), Expect = 2e-31
Identities = 155/201 (77%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 29502 GGCAGGACAGTGCTTGGCCAGGCTGAAGAGGTAATGATGCGTGCCGGCGGATGGCAAAAG 29561
||| | ||||| || ||||| || || ||||| | | || |||||||| ||||| |||
Sbjct 1554 GGCCGCACAGTTCTGGGCCAAGCCGAGCAGGTAGCGTTCCGCGCCGGCGGTTGGCAGAAG 1495
Query 29562 GCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCACAAGCCGGACTTCATCATCACG 29621
||||| ||||| || |||||| ||| ||||| || | ||||| ||||||||||||
Sbjct 1494 GCCCGGATGGAGCAACAGATGCGTGAATGGTTTGGCGATGTGCCGGCCTTCATCATCACC 1435
Query 29622 CTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGACTTCT-GCGCACTGGTAGAGCA 29680
|||| |||||||| ||| |||||| |||| |||| || | ||| |||||| |||||
Sbjct 1434 TTGGCCGCTGACTACTGCGCCCAATGCAGCGATGTAGATTTTTTGCG-ACTGGTTGAGCA 1376
Query 29681 TGAGCTTTATCACATCGCCCA 29701
|||||| |||||||| ||||
Sbjct 1375 TGAGCTCTATCACATTTCCCA 1355
>seq3031070
Length=905
Score = 140 bits (154), Expect = 1e-28
Identities = 230/328 (70%), Gaps = 3/328 (1%)
Strand=Plus/Minus
Query 29541 CGTGCCGGCGGATGGCAAAAGGCCCGAATGGAACAGCAGATGAATGAGTGGTTCGGGCAC 29600
|| |||||||| ||||| || ||||| ||||| || |||||| ||| |||||||| ||
Sbjct 897 CGCGCCGGCGGTTGGCAGAAAGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGCGAC 838
Query 29601 AAGCCGGACTTCATCATCACGCTGGCTGCTGACTATTGCCTGCAATGCTCCGATTTAGAC 29660
||||| |||||||||||| ||||| || ||||| ||| || ||| ||| | ||
Sbjct 837 GTGCCGGCCTTCATCATCACCCTGGCGGCCGACTACTGCGCCCAGTGCAGCGACCTTGAG 778
Query 29661 TTCTGCGCACTGGTAGAGCATGAGCTTTATCACATCGCCCAAGAAGTGGATGAGTTTGGC 29720
|||||||| ||| | || || ||||| |||||| | || || | || || | ||
Sbjct 777 TTCTGCGCCCTGATCGAACACGAGCTGTATCACCTGGCTCATGCGACCGACAAG-TACGC 719
Query 29721 TCACCGAAGTTTTACCGCGACTCAGGTAAGCCGAAGCTTTGCATGCGCGGACATGATGTT 29780
||| | | || ||| | | | || |||||| | ||| || || || |||
Sbjct 718 TCAACCAGCATTCACC-CAAGAC-GGCGCACCGAAGATCAAGCTGCAGGGCCACGACGTT 661
Query 29781 GAGGAATTCGTTGGCGTTGTCCGTCGATATGGCGCAAGCGCTGATGTCCAGGAATTAGTA 29840
|| || ||||| || || ||||| || ||||| |||||| |||| || || | || ||
Sbjct 660 GAAGAGTTCGTCGGTGTCGTCCGCCGTTATGGTGCAAGCCCTGACGTTCAAGCGTTGGTG 601
Query 29841 GATGCGGCAAATAAACCAGCAGAGGTGG 29868
|| || ||||| | || || |||||||
Sbjct 600 GACGCTGCAAACAGTCCTGCTGAGGTGG 573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146650270115486
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |