Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq3079416 86.0 9e-12 >seq3079416 Length=2120 Score = 86.0 bits (94), Expect = 9e-12 Identities = 198/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 122362 CATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGCA-G 122420 |||||| ||||| || || | |||| ||||| |||||| | ||| || ||| | Sbjct 1448 CATGAAGCAATACCTCGAACTCCTGCACGACGT-CGTGACCAATGGCCTGACCAAGGGCG 1390 Query 122421 ACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAA 122480 | ||||| ||||| ||||||| | | | |||| | || || ||||| Sbjct 1389 ATCGTACCGGCACCGGCACCCGGGCCGTGTTCGCCCGCCAGTATCGGCACAACCTGGCCG 1330 Query 122481 AAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTC 122540 | || ||||||||| | || ||||| || | ||| || |||| | | ||||| Sbjct 1329 ACGGCTTCCCGCTGCTGACCACCAAGAAACTGCACTTCAAAAGCATCGCCAACGAGCTGA 1270 Query 122541 TGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCT 122600 | ||| | | | ||| | ||||| ||| ||| || || || ||| ||| | |||| Sbjct 1269 TCTGGATGTTGAGCGGCAACACCAATATCAAGTGGCTTAACGAAAACGGCGTGCGCATCT 1210 Query 122601 GGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGG 122656 ||||||||||||| ||||| || | || |||||||||||||| |||| ||| Sbjct 1209 GGGATGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 1154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747610437675600