Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020079.1
Length=147737
Score E
Sequences producing significant alignments: (Bits) Value
seq3052734 102 7e-17
>seq3052734
Length=1191
Score = 102 bits (112), Expect = 7e-17
Identities = 218/319 (68%), Gaps = 10/319 (3%)
Strand=Plus/Minus
Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795
|| || || |||||||| || || |||||||| ||||| || ||| | |||||||||
Sbjct 659 GCACGGGCGTGATCCTCGACGAACAGCCAGTCGCGCACTTGCAAGCCATCGCCATACACC 600
Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGG-AT 39853
|| | | ||| | | || ||| || | | ||||||||||||||| || |
Sbjct 599 GGCAGCGGTTTGCCTG-CGAGGGCGTTGAGAATCACCAGTGGGATCAGCTTTTCAGGGAA 541
Query 39854 GTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGC 39913
|| || | ||||| |||| || ||||||||||| | || || |||| ||||||| |
Sbjct 540 GTGGA-ACGGCCCGTAGTTGTTCGAGCAGTTGGTCAACAGCACCGGCAGGCCGTAGGTAC 482
Query 39914 GGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGG---GCTTG 39970
| ||||| || || |||||||| || |||||||| || |||||| |||
Sbjct 481 GCTGCCAGGCGCGGACCAGATGGTCGGAGGCTGCCTTGCTGGCCGAGTACGGCGAGCT-- 424
Query 39971 AAGGGGCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTCTGCCATATCGCCGTACA 40030
||||| || | || |||||| || || || | | | || ||||||||||
Sbjct 423 -GGGGGCGTAGGGCGTGGTTTCGGTGAACAGATCGTCCACGCCGTGCAGGTCGCCGTACA 365
Query 40031 CTTCGTCTGTGGAGACGTG 40049
| ||||| ||||||| |||
Sbjct 364 CCTCGTCGGTGGAGATGTG 346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 454383847633320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |