Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq3052734 102 7e-17 >seq3052734 Length=1191 Score = 102 bits (112), Expect = 7e-17 Identities = 218/319 (68%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 39736 GCTCGCGCATGATCCTCAACAAAAAGCCAGTCTCGCACCTGGTCGCCTTTACCATACACC 39795 || || || |||||||| || || |||||||| ||||| || ||| | ||||||||| Sbjct 659 GCACGGGCGTGATCCTCGACGAACAGCCAGTCGCGCACTTGCAAGCCATCGCCATACACC 600 Query 39796 GGAATCTCTTTATTCGTCAAGATACTTGTGA-TGATTTTTGGGATCAGCTTTTCTGG-AT 39853 || | | ||| | | || ||| || | | ||||||||||||||| || | Sbjct 599 GGCAGCGGTTTGCCTG-CGAGGGCGTTGAGAATCACCAGTGGGATCAGCTTTTCAGGGAA 541 Query 39854 GTTGATAAGGCCCAAAGTTATTGGAGCAGTTGGTTATCACAACAGGCAAATCGTAGGTGC 39913 || || | ||||| |||| || ||||||||||| | || || |||| ||||||| | Sbjct 540 GTGGA-ACGGCCCGTAGTTGTTCGAGCAGTTGGTCAACAGCACCGGCAGGCCGTAGGTAC 482 Query 39914 GGTGCCAAGCTTTCACAAGATGGTCAGATGCTGCCTTAGACGCACTGTACGG---GCTTG 39970 | ||||| || || |||||||| || |||||||| || |||||| ||| Sbjct 481 GCTGCCAGGCGCGGACCAGATGGTCGGAGGCTGCCTTGCTGGCCGAGTACGGCGAGCT-- 424 Query 39971 AAGGGGCATAAGCTGTCTCTTCGGTAAAGGGAACGCCAGAGTCTGCCATATCGCCGTACA 40030 ||||| || | || |||||| || || || | | | || |||||||||| Sbjct 423 -GGGGGCGTAGGGCGTGGTTTCGGTGAACAGATCGTCCACGCCGTGCAGGTCGCCGTACA 365 Query 40031 CTTCGTCTGTGGAGACGTG 40049 | ||||| ||||||| ||| Sbjct 364 CCTCGTCGGTGGAGATGTG 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454383847633320