Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq47025 113 3e-19 seq357474 93.3 3e-13 seq381307 91.5 9e-13 seq155098 87.8 1e-11 seq185925 86.0 4e-11 >seq47025 Length=35021 Score = 113 bits (124), Expect = 3e-19 Identities = 345/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 |||| ||| | || || ||||| || || ||||||| ||||| | || || || |||| Sbjct 9279 TCAG-GATGCCAAGCTGGACAAGTCTCAGATCCATGATATTGTCTTGGTGGGTGGCTCAA 9221 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 | || || || || |||||| | || | | || ||||| ||| | |||||| Sbjct 9220 CCCACATCCCCAAGATT-GAGAAACTTCTCCAGGACTTCTTCAATGGGAAATAATTAAAT 9162 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || || | ||| ||| |||||||||| || ||| | || | ||| ||||| Sbjct 9161 AAGAGCATCAACCCCGGTGAGGCTCTTGCATATGGTGCAGCTATGCAGGTAGCCATTTTG 9102 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATA-TTGTACTTGTT-GACGTAACTCCACTTT 475901 || || | || | |||| | || | ||| |||| || || ||||| |||| Sbjct 9101 TCTGGAGA--CAAATCTGAAAATGTTCAAGACTTGCTGCTGTTAGATGTCACTCCTCTTT 9044 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || ||||||| | ||| || | |||||| || | ||| || | | | Sbjct 9043 CCCTTGGAATTGAAACTGCTGGTGGAGTCATGACTGTCCTCAAGCACA---ATGCCACCA 8987 Query 475962 TCCCATGCAAAAAATCAAAAGTATTTT-CCACTTATTCTGATAATCAAACAACTGTAACC 476020 | || | |||| || || ||| ||| || ||||| || || | |||| | Sbjct 8986 TTCC-TACAAAGAAGACGCAGACTTTCACCAGCTACTCTGACAACCAGCCTGGTGTACTC 8928 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || || | | || |||||| ||| || || ||||||||| | ||| | ||| Sbjct 8927 ATTCAGGTTTATGTAGGTGAGCGAACCAGGACCAACGATAATAACTTGCCTGGCAAGTTT 8868 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || ||| || |||||||| ||| | || |||||||| || ||||| ||||||||| Sbjct 8867 GAACTCACAGGCATACCTCCTGCCCCCTGTGGTGTTCCTCAGATGGAAGTCACTTTTGAT 8808 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 |||||||| ||||| ||||| || || ||||| ||||| Sbjct 8807 ATTGATGCCAATGGCATTCTCAA-GTCTCTGCTGTGGATAA 8768 Score = 86.0 bits (94), Expect = 4e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || || ||||||||||||||||| || | || |||| || ||| ||||| ||||| Sbjct 10141 AAGGTGGAAATAATTGCCAATGATCAGAGGAACTGAACCACCCCAAGCTATGTCACTTTT 10082 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 ||| | || || | || | |||||||| || | |||| || ||||| Sbjct 10081 ACTAATACCAAATGATTGATCAGTGATGCTGCAAAGAACCAAGTCCCAGTGAATCCCACC 10022 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || |||||||||| ||| | | ||||| | | ||| ||||| | |||||| Sbjct 10021 AACACAGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTAATGATGCTGTTGTCCAG 9962 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC 474615 ||||||||| |||| ||| || | |||| ||||| || ||| | ||| Sbjct 9961 TCTGATATGAAACATTAGCCCTTCATGGTGGCAAATGATGCTGGCAGACC 9912 >seq357474 Length=26394 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || ||| || |||||||| || | Sbjct 18503 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 18562 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||| || Sbjct 18563 GGTGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 18622 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 18623 GCTGTGGATAA 18633 Score = 86.0 bits (94), Expect = 4e-11 Identities = 222/336 (66%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||||||||| ||||||||||| | || ||||| || || | | | Sbjct 17505 CGTCTCCGTACTGCTTGTGAGCGTGCTAAGCGCACACTCTCTTCCAGCACCCAGGCCAGT 17564 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| ||||||| || | ||||||||| || | |||| |||||| | || | Sbjct 17565 ATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGA 17624 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| | | ||||| | || | || | || || || || ||| || Sbjct 17625 TTTGAAGAATTGAATGCTGATTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTT 17684 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | || || ||||| || || |||| || ||||| | || || || ||||| Sbjct 17685 CGGGATGCCAAGCTGGACAAGTCTCAGATCCACGATATTGTCTTGGTTGGTGGCTCAACC 17744 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 | ||||| || || ||||| | || | | || ||||| ||| | | ||| | Sbjct 17745 CGCATTCCCAAGAT-TCAGAAACTTCTCCAGGACTTCTTCAATGGGAAAGAACTGAATAA 17803 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || |||||||| |||||||| || || || Sbjct 17804 GAGCATCAACCCTGATGAGGCTGTTGCGTACGGTGC 17839 >seq381307 Length=16690 Score = 91.5 bits (100), Expect = 9e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 || ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || ||||| Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||| |||| ||||| || || ||||| | | || || ||||| || Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265 >seq155098 Length=7669 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || ||| || |||||||||||||||||||| Sbjct 7282 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTT 7341 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || || ||||| || ||| ||| || ||||| | | || || || || || Sbjct 7342 ATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 7401 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || ||||| || Sbjct 7402 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 7434 >seq185925 Length=7279 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||| | || | | ||| || |||||||||||||||||||| Sbjct 361 ATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 420 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734 || || ||||| || ||| ||| || ||||| || || || ||||| || Sbjct 421 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGA--CCTCAAGAGTG 478 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| | |||||| || Sbjct 479 ATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3135697977754628