Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq47025 113 3e-19
seq357474 93.3 3e-13
seq381307 91.5 9e-13
seq155098 87.8 1e-11
seq185925 86.0 4e-11
>seq47025
Length=35021
Score = 113 bits (124), Expect = 3e-19
Identities = 345/521 (66%), Gaps = 13/521 (2%)
Strand=Plus/Minus
Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724
|||| ||| | || || ||||| || || ||||||| ||||| | || || || ||||
Sbjct 9279 TCAG-GATGCCAAGCTGGACAAGTCTCAGATCCATGATATTGTCTTGGTGGGTGGCTCAA 9221
Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783
| || || || || |||||| | || | | || ||||| ||| | ||||||
Sbjct 9220 CCCACATCCCCAAGATT-GAGAAACTTCTCCAGGACTTCTTCAATGGGAAATAATTAAAT 9162
Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843
| || | || || | ||| ||| |||||||||| || ||| | || | ||| |||||
Sbjct 9161 AAGAGCATCAACCCCGGTGAGGCTCTTGCATATGGTGCAGCTATGCAGGTAGCCATTTTG 9102
Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATA-TTGTACTTGTT-GACGTAACTCCACTTT 475901
|| || | || | |||| | || | ||| |||| || || ||||| ||||
Sbjct 9101 TCTGGAGA--CAAATCTGAAAATGTTCAAGACTTGCTGCTGTTAGATGTCACTCCTCTTT 9044
Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961
| | || ||||||| | ||| || | |||||| || | ||| || | | |
Sbjct 9043 CCCTTGGAATTGAAACTGCTGGTGGAGTCATGACTGTCCTCAAGCACA---ATGCCACCA 8987
Query 475962 TCCCATGCAAAAAATCAAAAGTATTTT-CCACTTATTCTGATAATCAAACAACTGTAACC 476020
| || | |||| || || ||| ||| || ||||| || || | |||| |
Sbjct 8986 TTCC-TACAAAGAAGACGCAGACTTTCACCAGCTACTCTGACAACCAGCCTGGTGTACTC 8928
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
|| || | | || |||||| ||| || || ||||||||| | ||| | |||
Sbjct 8927 ATTCAGGTTTATGTAGGTGAGCGAACCAGGACCAACGATAATAACTTGCCTGGCAAGTTT 8868
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| || ||| || |||||||| ||| | || |||||||| || ||||| |||||||||
Sbjct 8867 GAACTCACAGGCATACCTCCTGCCCCCTGTGGTGTTCCTCAGATGGAAGTCACTTTTGAT 8808
Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
|||||||| ||||| ||||| || || ||||| |||||
Sbjct 8807 ATTGATGCCAATGGCATTCTCAA-GTCTCTGCTGTGGATAA 8768
Score = 86.0 bits (94), Expect = 4e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445
|| || ||||||||||||||||| || | || |||| || ||| ||||| |||||
Sbjct 10141 AAGGTGGAAATAATTGCCAATGATCAGAGGAACTGAACCACCCCAAGCTATGTCACTTTT 10082
Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505
||| | || || | || | |||||||| || | |||| || |||||
Sbjct 10081 ACTAATACCAAATGATTGATCAGTGATGCTGCAAAGAACCAAGTCCCAGTGAATCCCACC 10022
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
|| || |||||||||| ||| | | ||||| | | ||| ||||| | ||||||
Sbjct 10021 AACACAGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTAATGATGCTGTTGTCCAG 9962
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC 474615
||||||||| |||| ||| || | |||| ||||| || ||| | |||
Sbjct 9961 TCTGATATGAAACATTAGCCCTTCATGGTGGCAAATGATGCTGGCAGACC 9912
>seq357474
Length=26394
Score = 93.3 bits (102), Expect = 3e-13
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || ||| || |||||||| || |
Sbjct 18503 ACCAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCACGT 18562
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| ||||| || ||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 18563 GGTGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTCT 18622
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 18623 GCTGTGGATAA 18633
Score = 86.0 bits (94), Expect = 4e-11
Identities = 222/336 (66%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||||||||| ||||||||||| | || ||||| || || | | |
Sbjct 17505 CGTCTCCGTACTGCTTGTGAGCGTGCTAAGCGCACACTCTCTTCCAGCACCCAGGCCAGT 17564
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606
|||| ||||||| || | ||||||||| || | |||| |||||| | || |
Sbjct 17565 ATTGAGATTGATTCCCTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGA 17624
Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666
|||||||| | | ||||| | || | || | || || || || ||| ||
Sbjct 17625 TTTGAAGAATTGAATGCTGATTTGTTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTT 17684
Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726
| ||| | || || ||||| || || |||| || ||||| | || || || |||||
Sbjct 17685 CGGGATGCCAAGCTGGACAAGTCTCAGATCCACGATATTGTCTTGGTTGGTGGCTCAACC 17744
Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785
| ||||| || || ||||| | || | | || ||||| ||| | | ||| |
Sbjct 17745 CGCATTCCCAAGAT-TCAGAAACTTCTCCAGGACTTCTTCAATGGGAAAGAACTGAATAA 17803
Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821
|| | || |||||||| |||||||| || || ||
Sbjct 17804 GAGCATCAACCCTGATGAGGCTGTTGCGTACGGTGC 17839
>seq381307
Length=16690
Score = 91.5 bits (100), Expect = 9e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
|| ||| ||||||| ||||||| ||||||||||| |||||| | ||||| || |||||
Sbjct 7153 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 7212
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
|||||||| |||| ||||| || || ||||| | | || || ||||| ||
Sbjct 7213 AAAGATGCTGGAACTATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 7265
>seq155098
Length=7669
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||||| || || ||| || ||||||||||||||||||||
Sbjct 7282 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTT 7341
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
|| || ||||| || ||| ||| || ||||| | | || || || || ||
Sbjct 7342 ATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 7401
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||| || ||||| ||
Sbjct 7402 GGTCTTCCCCGTCAGGGTCTTCACAAAAATCTG 7434
>seq185925
Length=7279
Score = 86.0 bits (94), Expect = 4e-11
Identities = 113/155 (73%), Gaps = 4/155 (3%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| |||||||| |||||| | || | | ||| || ||||||||||||||||||||
Sbjct 361 ATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 420
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC--AGTGTGTGAAGTTTCAAGGGTA 480734
|| || ||||| || ||| ||| || ||||| || || || ||||| ||
Sbjct 421 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGA--CCTCAAGAGTG 478
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || ||||| | |||||| ||
Sbjct 479 ATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTG 513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3135697977754628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |