Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq3088379 114 3e-21 seq156999 100 6e-17 >seq3088379 Length=10556 Score = 114 bits (126), Expect = 3e-21 Identities = 269/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 24846 GCAAATGGCCGACCGCATCCAAATGGTCACCAGCAGCACCGCCGAGTATGAGCAAGTGCA 24905 ||| ||| | || ||| | ||||| |||||||| |||||| | | || || Sbjct 9603 GCAGATGTCGGATCGCCTTGGAATGGCGACCAGCAGTGTAAGCGAGTACAACCTGGTTCA 9662 Query 24906 GGCCCGGTTGCTGGAGACGGCCAGCCGCACCTACCGGCCGCTGGCGGAAGCCCAGGAGCT 24965 | ||| | || || || || | || |||||||| || || || ||||| || || || Sbjct 9663 AGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAAGAACT 9722 Query 24966 ATACATCCGTACTGCCGACAGCCTGAAGTCACTGCGGTACACCACCGAGCAAGCGCTGGA 25025 |||||||| || | || ||||| || || || | |||| |||| || |||||||| Sbjct 9723 GTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCGCTGGA 9782 Query 25026 CATTACCGATTCGTTTTC--CTTCCTGCTGGTAACTAACGCCGCGTCGGCGGACCGTGCG 25083 | | || | |||| ||| || |||| || ||| |||| || || || | Sbjct 9783 TGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGAAAA---G 9837 Query 25084 GCGAGT---GCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCTCTGAC 25140 || ||| || ||||| |||||||||||| | |||| || |||||||| |||| Sbjct 9838 GCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGGCTGAT 9897 Query 25141 GCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCGGAGTCCACC 25200 | |||||| | ||| | || |||||||| | | || || || | || | |||||| Sbjct 9898 GGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAATCCACC 9957 Query 25201 GGCAAGAGCACTGAGGAAATCCGCAAGCTGGGCATCGAGGGCA 25243 || |||| |||| || ||||||| || || | |||||| Sbjct 9958 GGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000 >seq156999 Length=6365 Score = 100 bits (110), Expect = 6e-17 Identities = 174/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 11477 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 11536 |||| |||||| | || ||| ||||||||||||||||| || || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11537 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATACCG 11596 |||| ||||||||| || | | ||| | | ||| ||| |||||||| || ||||| Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11597 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11654 | | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || || Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110 Query 11655 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11714 ||| || || | | | ||| |||||||| || || |||||||||||| Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170 Query 11715 CGCATATG 11722 ||| |||| Sbjct 4171 CGCCTATG 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113777033605038