Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020202.1
Length=37740
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 149 1e-31
seq3087822 129 1e-25
seq156999 91.5 3e-14
seq3088451 86.0 1e-12
>seq3084660
Length=3030
Score = 149 bits (164), Expect = 1e-31
Identities = 155/198 (78%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 26488 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26547
||||||||||||| ||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 26548 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 26606
| ||||| |||||||| || || || || ||| |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 26607 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 26665
||||||||| ||| || | || || || ||||||||||| |||| || | || |
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCT-GGCGTCGTGAA 2023
Query 26666 GCTGGCCATGGATGCCTA 26683
||| || | ||||||||
Sbjct 2022 GCTCGCGACCGATGCCTA 2005
>seq3087822
Length=6084
Score = 129 bits (142), Expect = 1e-25
Identities = 147/192 (77%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 26488 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26547
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 26548 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 26606
| ||||| |||||||| || || || || ||| || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 26607 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 26665
|||||||| ||| || | || || || || |||||| || ||| ||| || | |
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAATCACGC-GGGCGCTGTGAA 5065
Query 26666 GCTGGCCATGGA 26677
|||||| | |||
Sbjct 5064 GCTGGCGACGGA 5053
>seq156999
Length=6365
Score = 91.5 bits (100), Expect = 3e-14
Identities = 172/248 (69%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 11306 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11365
|||| |||||| | || ||| ||||||||||||||||| | || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 11366 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11425
|||| ||||||||| || | | ||| | | ||| || |||||||| || || ||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11426 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11483
| | ||||| ||||||||||||| ||| ||||||||| ||| | ||| | | || ||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110
Query 11484 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11543
||| || || | | | ||| |||||||| || || ||||||||||||
Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170
Query 11544 CGCATATG 11551
||| ||||
Sbjct 4171 CGCCTATG 4178
>seq3088451
Length=13260
Score = 86.0 bits (94), Expect = 1e-12
Identities = 168/241 (70%), Gaps = 8/241 (3%)
Strand=Plus/Plus
Query 27339 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGACTA 27397
|||||| || || | || ||||||||||| || ||| || | ||| | |||||||
Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434
Query 27398 TGTCGTGCAACGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 27456
| |||||| | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493
Query 27457 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 27514
||| || ||| | || ||||||||| | || | |||| ||| ||| |||| ||
Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551
Query 27515 GCGCATCAGCCTGGATCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 27574
| | ||| ||||| || ||||||||||| || || | ||||||||||| |||||
Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611
Query 27575 G 27575
|
Sbjct 7612 G 7612
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116221564414564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |