Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020202.1 Length=37740 Score E Sequences producing significant alignments: (Bits) Value seq3084660 149 1e-31 seq3087822 129 1e-25 seq156999 91.5 3e-14 seq3088451 86.0 1e-12 >seq3084660 Length=3030 Score = 149 bits (164), Expect = 1e-31 Identities = 155/198 (78%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 26488 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26547 ||||||||||||| ||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 26548 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 26606 | ||||| |||||||| || || || || ||| |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 26607 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 26665 ||||||||| ||| || | || || || ||||||||||| |||| || | || | Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCT-GGCGTCGTGAA 2023 Query 26666 GCTGGCCATGGATGCCTA 26683 ||| || | |||||||| Sbjct 2022 GCTCGCGACCGATGCCTA 2005 >seq3087822 Length=6084 Score = 129 bits (142), Expect = 1e-25 Identities = 147/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 26488 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 26547 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 26548 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 26606 | ||||| |||||||| || || || || ||| || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 26607 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 26665 |||||||| ||| || | || || || || |||||| || ||| ||| || | | Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAATCACGC-GGGCGCTGTGAA 5065 Query 26666 GCTGGCCATGGA 26677 |||||| | ||| Sbjct 5064 GCTGGCGACGGA 5053 >seq156999 Length=6365 Score = 91.5 bits (100), Expect = 3e-14 Identities = 172/248 (69%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 11306 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11365 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11366 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11425 |||| ||||||||| || | | ||| | | ||| || |||||||| || || || Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11426 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11483 | | ||||| ||||||||||||| ||| ||||||||| ||| | ||| | | || || Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110 Query 11484 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11543 ||| || || | | | ||| |||||||| || || |||||||||||| Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170 Query 11544 CGCATATG 11551 ||| |||| Sbjct 4171 CGCCTATG 4178 >seq3088451 Length=13260 Score = 86.0 bits (94), Expect = 1e-12 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 27339 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGACTA 27397 |||||| || || | || ||||||||||| || ||| || | ||| | ||||||| Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434 Query 27398 TGTCGTGCAACGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 27456 | |||||| | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493 Query 27457 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 27514 ||| || ||| | || ||||||||| | || | |||| ||| ||| |||| || Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551 Query 27515 GCGCATCAGCCTGGATCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 27574 | | ||| ||||| || ||||||||||| || || | ||||||||||| ||||| Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611 Query 27575 G 27575 | Sbjct 7612 G 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116221564414564