Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq3088379 114 3e-21 seq156999 84.2 5e-12 >seq3088379 Length=10556 Score = 114 bits (126), Expect = 3e-21 Identities = 236/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 25014 GTGCAGGCCCGGCTGCTGGAGACGGCCAGCCGCACCTATCGGCCGCTGGCGGAAGCCCAA 25073 || || | ||| || || || || || | || ||||| || || || || ||||| ||| Sbjct 9658 GTTCAAGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAA 9717 Query 25074 GAGTTGTACATCCGCACCGCCGACAGCCTGAAGTCGTTGCGGTACACCACCGAACAAGCG 25133 || ||||||||||||| | || ||||| || ||| || | |||| |||| || ||| Sbjct 9718 GAACTGTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCG 9777 Query 25134 CTGGACATCACCGATTCGTTTTC--CTTCTTGCTGGTAACCAACGCCGCGTCGGCGGACC 25191 ||||| | | || | |||| ||| | |||| |||||| |||| || || || Sbjct 9778 CTGGATGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGA-- 9833 Query 25192 GTGCGGCGAG---CGCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCT 25248 ||| || || ||||| |||||||||||| | |||| || |||||||| Sbjct 9834 -AAAGGCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGG 9892 Query 25249 CTGACGCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCAGAGT 25308 |||| | |||||| | ||| | || |||||||| | | || || || | || | | Sbjct 9893 CTGATGGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAAT 9952 Query 25309 CCACCGGCAAGAGCACCGAGGAAATCCGCAAGCTAGGCATCGAGGGCA 25356 ||||||| |||| | || || ||||||| || || | |||||| Sbjct 9953 CCACCGGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000 >seq156999 Length=6365 Score = 84.2 bits (92), Expect = 5e-12 Identities = 169/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 11247 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11306 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 11307 GGCAGGGCCAACTCCCCCACGACCCGCAGATCGAGCCGCGCTTCTGTCGTTTCGACACGG 11366 |||| ||||| ||| | ||| ||| | | ||| ||| ||| || || || ||| Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 11367 CGCATAACGGCACCCGCGCATTGGCCAAGCTGCTGCTGAACTACC-GCAAGGTCTATGGC 11425 | | ||||| | |||||| ||| |||| ||||||||| ||||| ||| | |||| Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAGC-ATGGG 4111 Query 11426 CTGCGCACCGTCGAATCGCTGATCGCACGCTGGGCGCCGTCGAACGAGAACAACACCCGC 11485 ||| || || | | | ||| |||||||| || ||| |||||| ||||| | Sbjct 4112 CTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGCC 4171 Query 11486 GCCTATG 11492 ||||||| Sbjct 4172 GCCTATG 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114233263819174