Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020203.1
Length=37095
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 114 3e-21
seq156999 84.2 5e-12
>seq3088379
Length=10556
Score = 114 bits (126), Expect = 3e-21
Identities = 236/348 (68%), Gaps = 10/348 (3%)
Strand=Plus/Plus
Query 25014 GTGCAGGCCCGGCTGCTGGAGACGGCCAGCCGCACCTATCGGCCGCTGGCGGAAGCCCAA 25073
|| || | ||| || || || || || | || ||||| || || || || ||||| |||
Sbjct 9658 GTTCAAGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAA 9717
Query 25074 GAGTTGTACATCCGCACCGCCGACAGCCTGAAGTCGTTGCGGTACACCACCGAACAAGCG 25133
|| ||||||||||||| | || ||||| || ||| || | |||| |||| || |||
Sbjct 9718 GAACTGTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCG 9777
Query 25134 CTGGACATCACCGATTCGTTTTC--CTTCTTGCTGGTAACCAACGCCGCGTCGGCGGACC 25191
||||| | | || | |||| ||| | |||| |||||| |||| || || ||
Sbjct 9778 CTGGATGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGA-- 9833
Query 25192 GTGCGGCGAG---CGCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCT 25248
||| || || ||||| |||||||||||| | |||| || ||||||||
Sbjct 9834 -AAAGGCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGG 9892
Query 25249 CTGACGCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCAGAGT 25308
|||| | |||||| | ||| | || |||||||| | | || || || | || | |
Sbjct 9893 CTGATGGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAAT 9952
Query 25309 CCACCGGCAAGAGCACCGAGGAAATCCGCAAGCTAGGCATCGAGGGCA 25356
||||||| |||| | || || ||||||| || || | ||||||
Sbjct 9953 CCACCGGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000
>seq156999
Length=6365
Score = 84.2 bits (92), Expect = 5e-12
Identities = 169/247 (68%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 11247 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 11306
|||| |||||| | || ||| ||||||||||||||||| | || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 11307 GGCAGGGCCAACTCCCCCACGACCCGCAGATCGAGCCGCGCTTCTGTCGTTTCGACACGG 11366
|||| ||||| ||| | ||| ||| | | ||| ||| ||| || || || |||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11367 CGCATAACGGCACCCGCGCATTGGCCAAGCTGCTGCTGAACTACC-GCAAGGTCTATGGC 11425
| | ||||| | |||||| ||| |||| ||||||||| ||||| ||| | ||||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAGC-ATGGG 4111
Query 11426 CTGCGCACCGTCGAATCGCTGATCGCACGCTGGGCGCCGTCGAACGAGAACAACACCCGC 11485
||| || || | | | ||| |||||||| || ||| |||||| ||||| |
Sbjct 4112 CTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGCC 4171
Query 11486 GCCTATG 11492
|||||||
Sbjct 4172 GCCTATG 4178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114233263819174
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |