Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq291908 389 4e-103 seq153451 161 1e-34 seq174664 98.7 1e-15 seq107656 89.7 6e-13 >seq291908 Length=12262 Score = 389 bits (430), Expect = 4e-103 Identities = 683/986 (69%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || || Sbjct 1638 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGGGTCGAATTTGTTGGC 1579 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | | || ||||| || ||| || | ||||| ||||| || Sbjct 1578 AAACAAGTGGTGCACGCGCAGCAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 1522 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| ||| |||||||| | || || || | ||||| ||||| Sbjct 1521 GGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 1462 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| |||||||||||||| || |||||||| || | Sbjct 1461 AAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAGACGTGTCGTACTTATG 1402 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || |||| || | ||| | |||||||| || | || Sbjct 1401 GCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 1342 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | || Sbjct 1341 GTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 1282 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || || || || || | ||| | Sbjct 1281 CACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTTCCTGAAAACAGAGGTGT 1222 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || |||| | || | ||| ||||| | Sbjct 1221 TTCAAGAGGTGGA-TGTATTTTGTCAGTTCCCATGTTGGTCAGCTTTCCATTCACGACTT 1163 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || || | |||||| | ||||| ||||| ||| Sbjct 1162 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGT 1103 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| | | | || |||| | |||| ||||| ||||| || || | ||||| | Sbjct 1102 TCTCACCCATCAACAACTTGAGCTTCCTGACAATCTCCAGGTTGGTTTTAATAGGAAAAT 1043 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCT 160708 | | ||||| | ||||||| ||||||||| | || ||| || || || |||| Sbjct 1042 CCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA--TCCTGGAGAGGTCCTG 985 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| ||| ||||| || ||||||||||| || ||||| || ||||| || | Sbjct 984 CATGCAGTTAAGATCAGCCTGAACCCGGCTCCAGGATGCATACACCACATTCTCCAGCTG 925 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||| |||||||| ||| ||| || || | || |||| || | ||| ||| | Sbjct 924 ACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCA-CAGCTGCAGCCAAAAATG 866 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 || | || | ||| ||||||||| | ||||| | ||||||||| |||||||||| Sbjct 865 AT-TCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTCTGAGGCATGTAGATGGCC 807 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 806 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 747 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| || | | | | || || ||| ||||||| ||| || Sbjct 746 AACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAA 687 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 686 GCACAATCACCAGTCATGTTTATGTA 661 >seq153451 Length=22869 Score = 161 bits (178), Expect = 1e-34 Identities = 214/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || | || ||||||||| || Sbjct 9333 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGATATTAAAGAGGCACTTG 9274 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || ||||||| |||||||||||| || || | |||||||| ||| || Sbjct 9273 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCA 9214 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||| ||||| Sbjct 9213 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGCTCTCG 9154 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 9153 CTGTAGGTGAGCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 9094 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || |||| | ||||| || ||||| | ||||| || |||||||||||| || Sbjct 9093 ACTTCTTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGTGCT 9037 >seq174664 Length=6299 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 5101 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 5042 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 5041 CTAGCTCACCGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 4982 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 4981 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 4922 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 4921 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 4862 Query 176422 TACA 176425 | || Sbjct 4861 TGCA 4858 >seq107656 Length=18857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 193/288 (67%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || ||||| || || || || |||||| || |||||||||| ||| |||| Sbjct 5340 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAGGTCCCCGGC 5284 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||| | || || || | || |||||| | || | || || | Sbjct 5283 CCCATAAATGCAAATGGCCCGCTGATGGATTCCAGAGCAAGGTGCATAAGGTGCCCCCAT 5224 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || || || | || ||||||||| || | |||||| || || |||||| || Sbjct 5223 GCTGACATCTCCCTCATGGTCCTGCCACTTGACCAGCCTGGCGATGGCAGTCATGTCTGA 5164 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | ||| || ||| |||||| | || || | | || |||||| ||||| Sbjct 5163 GATGTGATACTTGGGGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 5104 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| |||||||| || ||||| || ||||| || | |||||| || Sbjct 5103 GGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTGGCCCATTCAAT 5056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554934851892360