Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq291908 389 4e-103
seq153451 161 1e-34
seq174664 98.7 1e-15
seq107656 89.7 6e-13
>seq291908
Length=12262
Score = 389 bits (430), Expect = 4e-103
Identities = 683/986 (69%), Gaps = 13/986 (1%)
Strand=Plus/Minus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| ||||||||| || ||
Sbjct 1638 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGGGTCGAATTTGTTGGC 1579
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| || | | || ||||| || ||| || | ||||| ||||| ||
Sbjct 1578 AAACAAGTGGTGCACGCGCAGCAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 1522
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| |||||| ||| |||||||| | || || || | ||||| |||||
Sbjct 1521 GGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 1462
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||||||||| || ||||||||||| |||||||||||||| || |||||||| || |
Sbjct 1461 AAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAGACGTGTCGTACTTATG 1402
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
||| || | | || || || |||| || | ||| | |||||||| || | ||
Sbjct 1401 GCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 1342
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | ||
Sbjct 1341 GTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 1282
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|||| || || || | || ||||| || || || || || || | ||| |
Sbjct 1281 CACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTTCCTGAAAACAGAGGTGT 1222
Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| || ||| ||| ||| || |||| | || | ||| ||||| |
Sbjct 1221 TTCAAGAGGTGGA-TGTATTTTGTCAGTTCCCATGTTGGTCAGCTTTCCATTCACGACTT 1163
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| | |||| |||||||| | | || || | |||||| | ||||| ||||| |||
Sbjct 1162 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGT 1103
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| |||| | | | || |||| | |||| ||||| ||||| || || | ||||| |
Sbjct 1102 TCTCACCCATCAACAACTTGAGCTTCCTGACAATCTCCAGGTTGGTTTTAATAGGAAAAT 1043
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCT 160708
| | ||||| | ||||||| ||||||||| | || ||| || || || ||||
Sbjct 1042 CCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA--TCCTGGAGAGGTCCTG 985
Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768
|||||| |||| ||| ||||| || ||||||||||| || ||||| || ||||| || |
Sbjct 984 CATGCAGTTAAGATCAGCCTGAACCCGGCTCCAGGATGCATACACCACATTCTCCAGCTG 925
Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826
|||||| |||||||| ||| ||| || || | || |||| || | ||| ||| |
Sbjct 924 ACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCA-CAGCTGCAGCCAAAAATG 866
Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886
|| | || | ||| ||||||||| | ||||| | ||||||||| ||||||||||
Sbjct 865 AT-TCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTCTGAGGCATGTAGATGGCC 807
Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946
|| || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||
Sbjct 806 CTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGA 747
Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006
||||| | ||| || ||| || | | | | || || ||| ||||||| ||| ||
Sbjct 746 AACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAA 687
Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032
||||||| | |||||||| || ||
Sbjct 686 GCACAATCACCAGTCATGTTTATGTA 661
>seq153451
Length=22869
Score = 161 bits (178), Expect = 1e-34
Identities = 214/297 (72%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | |||| || ||||| || || || || | || ||||||||| ||
Sbjct 9333 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGATATTAAAGAGGCACTTG 9274
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || | || ||||||| |||||||||||| || || | |||||||| ||| ||
Sbjct 9273 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCA 9214
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || || || | ||| || |||||||| || ||| |||||
Sbjct 9213 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGCTCTCG 9154
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| |
Sbjct 9153 CTGTAGGTGAGCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 9094
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449
|| |||| | ||||| || ||||| | ||||| || |||||||||||| ||
Sbjct 9093 ACTTCTTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGTGCT 9037
>seq174664
Length=6299
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||
Sbjct 5101 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 5042
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| || |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 5041 CTAGCTCACCGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 4982
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || |
Sbjct 4981 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 4922
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || |
Sbjct 4921 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 4862
Query 176422 TACA 176425
| ||
Sbjct 4861 TGCA 4858
>seq107656
Length=18857
Score = 89.7 bits (98), Expect = 6e-13
Identities = 193/288 (67%), Gaps = 3/288 (1%)
Strand=Plus/Minus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || ||||| || || || || |||||| || |||||||||| ||| ||||
Sbjct 5340 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAGGTCCCCGGC 5284
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | | ||| | || || || | || |||||| | || | || || |
Sbjct 5283 CCCATAAATGCAAATGGCCCGCTGATGGATTCCAGAGCAAGGTGCATAAGGTGCCCCCAT 5224
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
|| || || || | || ||||||||| || | |||||| || || |||||| ||
Sbjct 5223 GCTGACATCTCCCTCATGGTCCTGCCACTTGACCAGCCTGGCGATGGCAGTCATGTCTGA 5164
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| ||| || ||| |||||| | || || | | || |||||| |||||
Sbjct 5163 GATGTGATACTTGGGGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 5104
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384
|||||| |||||||| || ||||| || ||||| || | |||||| ||
Sbjct 5103 GGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTGGCCCATTCAAT 5056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554934851892360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |