Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq2799564 131 4e-26 seq2951953 107 5e-19 seq268701 100 7e-17 >seq2799564 Length=235 Score = 131 bits (144), Expect = 4e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| ||| || ||| |||||||| ||||||| || || |||||||| |||||| Sbjct 205 CCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAACCTTTGCGCAGGTACTC 146 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 |||||| | |||||| | ||| ||| | | | || |||||||| || ||||| || || Sbjct 145 GCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGAC 86 Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007 | ||| || ||||||||||| | |||| || ||||| || | || | || | ||| Sbjct 85 CTTCTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCAC 26 Query 26008 GGCGGTACCGTTAGGCA 26024 |||| |||||||||||| Sbjct 25 GGCGTTACCGTTAGGCA 9 >seq2951953 Length=451 Score = 107 bits (118), Expect = 5e-19 Identities = 170/241 (71%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 25782 CGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGG--TTCTGCCACTTGCGCGT 25839 |||| || || ||||| ||||| | ||||| ||| | || | ||||| ||| || Sbjct 216 CGACTACGATTTCAGTGGTGTAACG--CTTGA---TGCCGTCTTTTTCCCACTCGCGGGT 270 Query 25840 GCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTC 25899 ||| ||||||||| ||||| | || || |||||||| |||||| || || | ||| Sbjct 271 TTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCTC 330 Query 25900 TGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGT 25959 ||| | ||| ||| | ||| || ||||||||||| ||||| ||| ||| || Sbjct 331 TGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGGT 390 Query 25960 CTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTT 26019 ||||||||| | |||| || ||||| || | || | || | ||||||| ||||||| Sbjct 391 CTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTT 450 Query 26020 A 26020 | Sbjct 451 A 451 >seq268701 Length=8118 Score = 100 bits (110), Expect = 7e-17 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887 ||||| ||| || ||| |||||||||||||||| || || |||||||| ||| || Sbjct 7979 CCACTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTC 8038 Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947 ||||| | ||||||| ||| ||| | | | ||||||||||| || ||||| || || Sbjct 8039 ACCGGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGAC 8098 Query 25948 CGGCTGCCCTGTCTGCTTGT 25967 | ||| || |||||||||| Sbjct 8099 CTTCTGGCCAGTCTGCTTGT 8118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119125408074808