Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_020488.1
Length=38682
Score E
Sequences producing significant alignments: (Bits) Value
seq2799564 131 4e-26
seq2951953 107 5e-19
seq268701 100 7e-17
>seq2799564
Length=235
Score = 131 bits (144), Expect = 4e-26
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887
||||| ||| || ||| |||||||| ||||||| || || |||||||| ||||||
Sbjct 205 CCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAACCTTTGCGCAGGTACTC 146
Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947
|||||| | |||||| | ||| ||| | | | || |||||||| || ||||| || ||
Sbjct 145 GCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGAC 86
Query 25948 CGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCAC 26007
| ||| || ||||||||||| | |||| || ||||| || | || | || | |||
Sbjct 85 CTTCTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCAC 26
Query 26008 GGCGGTACCGTTAGGCA 26024
|||| ||||||||||||
Sbjct 25 GGCGTTACCGTTAGGCA 9
>seq2951953
Length=451
Score = 107 bits (118), Expect = 5e-19
Identities = 170/241 (71%), Gaps = 7/241 (3%)
Strand=Plus/Plus
Query 25782 CGACAACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGG--TTCTGCCACTTGCGCGT 25839
|||| || || ||||| ||||| | ||||| ||| | || | ||||| ||| ||
Sbjct 216 CGACTACGATTTCAGTGGTGTAACG--CTTGA---TGCCGTCTTTTTCCCACTCGCGGGT 270
Query 25840 GCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTC 25899
||| ||||||||| ||||| | || || |||||||| |||||| || || | |||
Sbjct 271 TTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCTC 330
Query 25900 TGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGT 25959
||| | ||| ||| | ||| || ||||||||||| ||||| ||| ||| ||
Sbjct 331 TGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGGT 390
Query 25960 CTGCTTGTCTTTGTACTGCTCACTGGTGGCAATGCTTAAATTTGCCACGGCGGTACCGTT 26019
||||||||| | |||| || ||||| || | || | || | ||||||| |||||||
Sbjct 391 CTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGTT 450
Query 26020 A 26020
|
Sbjct 451 A 451
>seq268701
Length=8118
Score = 100 bits (110), Expect = 7e-17
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 25828 CCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTC 25887
||||| ||| || ||| |||||||||||||||| || || |||||||| ||| ||
Sbjct 7979 CCACTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTC 8038
Query 25888 GCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTAC 25947
||||| | ||||||| ||| ||| | | | ||||||||||| || ||||| || ||
Sbjct 8039 ACCGGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGAC 8098
Query 25948 CGGCTGCCCTGTCTGCTTGT 25967
| ||| || ||||||||||
Sbjct 8099 CTTCTGGCCAGTCTGCTTGT 8118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 119125408074808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |