Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq3086203 149 2e-31 >seq3086203 Length=3793 Score = 149 bits (164), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 2386 GCAGTCTCTTTACTCGCCTCATGGTCGTAGTAATACTTGGGCGACTTGGACAGCAGGAAG 2445 |||| || || |||| || |||||||||||||| || |||||| ||| || || Sbjct 1239 GCAGGTTCCTTGATCGCATCCTGGTCGTAGTAATAACGTGGTGACTTGCTCAGGAGAAAC 1298 Query 2446 ATGTACTCGTGCGCCTTTGTGCAGCGGTCGCGCACGCTCTCCGGCATTGGGTTTGGCTTG 2505 | |||||| |||| ||||||||| ||||| | || ||||| ||||| || || Sbjct 1299 AGGTACTCATGCGACTTTGTGCACCGGTCCTTGGTGGATTCAGGCATGGGGTTCGGTTTA 1358 Query 2506 TGCCAGATAATATCCTGACGCAGGTACCAGCCGTCGGCTTGCAGGGCGAACGCTACGCGC 2565 |||||||| || |||||||||||||||||||| || |||| |||||||| || | ||| Sbjct 1359 TGCCAGATGATGTCCTGACGCAGGTACCAGCCATCATCTTGAAGGGCGAAGGCGAGTCGC 1418 Query 2566 CAGGGGATGCCGATAAGGTCTTTTGCTTTCAATCCGTTAGGTGCAGATCG 2615 ||||| | ||| || ||||||||| |||| || | |||| || ||| Sbjct 1419 CAGGGCACGCCCATCAGGTCTTTTTGCTTCAGACCCGTCGGTGGAGCTCG 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125330755514374