Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3086203 86.0 7e-12 >seq3086203 Length=3793 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 81839 GGTTCCTTGATTGCTTCGTTGTCATAATAATACTTTTTATTTTTACTGAGCAAGAATATA 81898 ||||||||||| || || | ||| || ||||| | || || || | || | Sbjct 1242 GGTTCCTTGATCGCATCCTGGTCGTAGTAATAACGTGGTGACTTGCTCAGGAGAAACAGG 1301 Query 81899 TGCTCATGTGATTTAGTGCATCTGTCCTTAACAGACTCAGGCATAGGATTTGGTTTATGC 81958 | |||||| || || ||||| | |||||| || |||||||| || || ||||||||| Sbjct 1302 TACTCATGCGACTTTGTGCACCGGTCCTTGGTGGATTCAGGCATGGGGTTCGGTTTATGC 1361 Query 81959 CATATGATATCCTGACGTAGATACCATCCATC 81990 || ||||| |||||||| || ||||| ||||| Sbjct 1362 CAGATGATGTCCTGACGCAGGTACCAGCCATC 1393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556645363407720