Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_020850.1 Length=38374 Score E Sequences producing significant alignments: (Bits) Value seq3088211 95.1 3e-15 >seq3088211 Length=8104 Score = 95.1 bits (104), Expect = 3e-15 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 30888 AATATGAAAAAGCTCGTGCTCTACCAGTGAGCAAAATTCAACATTTGAGCAATGATTGCA 30947 ||| ||| | ||||| ||||| |||||| |||| || |||| ||| || ||| Sbjct 1360 AATGTGATAGAGCTCATGCTCAACCAGTCGCAAAAAATCTACATCGCTGCATTGGGCGCA 1419 Query 30948 GTATTCGGCGGATAGGGTAATTATAAACTTCGGAACGTAGCCAAACCATTCAAACACTTG 31007 ||| || |||| | ||| || || || ||| || | ||||||||||||| || || Sbjct 1420 GTAGTCAGCGGCCAAGGTGATGATGAAGGCCGGCACATCGCCAAACCATTCACGCATCTG 1479 Query 31008 TTGTTCCATTCTGGCTTTTTTCCATCCACCAGCCATAAACGAAACTTGCTCGGCTTGACC 31067 ||| ||||| | ||| || | ||| || || || |||| || ||||||||||| || Sbjct 1480 TTGCTCCATCCGGGCCTTCTGCCAACCGCCGGCGCGGAACGCTACCTGCTCGGCTTGGCC 1539 Query 31068 TAAAACGACGCGGCCTTGCTTTTCGAATGAGTCGGAAGCCCACAT 31112 | ||| |||||| ||| | ||||| | || |||||||| Sbjct 1540 CAGAACTGTGCGGCCCTGCCTCTCGAAGCACGACGACGCCCACAT 1584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118175956007552