Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq2884985 84.2 6e-12 >seq2884985 Length=308 Score = 84.2 bits (92), Expect = 6e-12 Identities = 166/244 (68%), Gaps = 14/244 (6%) Strand=Plus/Minus Query 19827 CGCGGGGATGGGTATCGGCGTGGAGAATACGCCATCCGGCATGCAGTCGCAGGTTATCTT 19886 |||||| || || | || ||||||| | | |||| ||||||||||| | ||| | Sbjct 291 CGCGGGTATCGGGCTTGGGTTGGAGAACGGGTCGGGCGGCCTGCAGTCGCAGTTCATCAT 232 Query 19887 CCTGGCTGACCGCTTCGCCGTCACCACGGC-AGCCGGAAATAGCGTAGCTTTGCCGTTCG 19945 | || ||||| |||||| || ||| |||||| || | |||| || | Sbjct 231 CGACGCCGACCGGTTCGCCATC----GGGCAAGCCGG-CATCG--------TGCCCTTTG 185 Query 19946 TGATCCAGAACGGGCAGACATTCATCCGGGCCAGCTTCATCCAGGACGGCACTATCAGCA 20005 | | ||| |||||||| ||||| | ||||||||||||||||| |||| || Sbjct 184 CGGTACAGGGTGGGCAGACTTTCATTAAATCGGCTTTCATCCAGGACGGCACGATCACCA 125 Query 20006 ACGCAAAGATTGGTAATTTTATCCAGTCGAACAATTATGTTGCTGGTTCTGCTGGCTGGA 20065 |||| ||||| || || | |||||||| || || || | | ||| |||||||||| Sbjct 124 ACGCCAAGATCGGCAACTACATCCAGTCCAATAACTACGACCCAGGTAAGGCTGGCTGGA 65 Query 20066 AGCT 20069 |||| Sbjct 64 AGCT 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142146538069184