Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq3048444 84.2 4e-11
>seq3048444
Length=1121
Score = 84.2 bits (92), Expect = 4e-11
Identities = 268/386 (69%), Gaps = 46/386 (12%)
Strand=Plus/Plus
Query 46772 ataatatatattataataaac-tgtat-tatttgactatttttaataatat--atgttat 46827
||||||||||||||| || | ||||| ||| || |||| | || |||| || ||||
Sbjct 172 ATAATATATATTATATTACATATGTATCTATATGTATATTATATATTATATGTATATTAT 231
Query 46828 ggtatatatgtaatttACGATATTTGGAAATTTTAATATGTTTACTGATATG-ATATTTA 46886
| |||||||| ||| |||| ||| | |||||| || | ||||| |||| ||
Sbjct 232 TAT-TATATGTATATTAT-ATAT-----AATAT--ATATGTATATT-ATATGTATATATA 281
Query 46887 -ATAAT-TGGATAAACTGTATAAAAT-TAAGAGACATATGTATTATTTTATCTATAATAA 46943
||||| | || | ||||||| || || | | |||||||||||| ||| |||| ||
Sbjct 282 TATAATATATATTATATGTATAATATATATTATATATATGTATTATTATATGTATATTA- 340
Query 46944 CTAT-TATATTTAATTGTGCATTAACAGTAT-TAGAATtatactcattcatatatttaaa 47001
||| ||||| || | ||| | ||||| || | |||| | || |||||||
Sbjct 341 -TATGTATATACTATATTACAT--ATAGTATATATATGTATA-TTATACATATAT----- 391
Query 47002 acatatacatatat-caaatatagcactatgtata--ataaataCTTCGttacttttaat 47058
|||||||||||| || ||||| | |||||||| ||| ||| | |||| ||
Sbjct 392 -AATATACATATATACATATATATTA-TATGTATATTATATATAATATATTACATT---- 445
Query 47059 taatatatttataaatttattat-taatgtatgctatatacttaaatattaga-attata 47116
|||||| || | || |||||| | | |||| |||||| | |||||| | ||||||
Sbjct 446 --ATATATATA-ATATATATTATATTACATATG-TATATATATGTATATTATATATTATA 501
Query 47117 gtaaaaatatttataatactatatat 47142
| | || |||||||| |||||||
Sbjct 502 -TGTATATTATTATAATATTATATAT 526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 864921993617520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |