Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3048444 84.2 4e-11 >seq3048444 Length=1121 Score = 84.2 bits (92), Expect = 4e-11 Identities = 268/386 (69%), Gaps = 46/386 (12%) Strand=Plus/Plus Query 46772 ataatatatattataataaac-tgtat-tatttgactatttttaataatat--atgttat 46827 ||||||||||||||| || | ||||| ||| || |||| | || |||| || |||| Sbjct 172 ATAATATATATTATATTACATATGTATCTATATGTATATTATATATTATATGTATATTAT 231 Query 46828 ggtatatatgtaatttACGATATTTGGAAATTTTAATATGTTTACTGATATG-ATATTTA 46886 | |||||||| ||| |||| ||| | |||||| || | ||||| |||| || Sbjct 232 TAT-TATATGTATATTAT-ATAT-----AATAT--ATATGTATATT-ATATGTATATATA 281 Query 46887 -ATAAT-TGGATAAACTGTATAAAAT-TAAGAGACATATGTATTATTTTATCTATAATAA 46943 ||||| | || | ||||||| || || | | |||||||||||| ||| |||| || Sbjct 282 TATAATATATATTATATGTATAATATATATTATATATATGTATTATTATATGTATATTA- 340 Query 46944 CTAT-TATATTTAATTGTGCATTAACAGTAT-TAGAATtatactcattcatatatttaaa 47001 ||| ||||| || | ||| | ||||| || | |||| | || ||||||| Sbjct 341 -TATGTATATACTATATTACAT--ATAGTATATATATGTATA-TTATACATATAT----- 391 Query 47002 acatatacatatat-caaatatagcactatgtata--ataaataCTTCGttacttttaat 47058 |||||||||||| || ||||| | |||||||| ||| ||| | |||| || Sbjct 392 -AATATACATATATACATATATATTA-TATGTATATTATATATAATATATTACATT---- 445 Query 47059 taatatatttataaatttattat-taatgtatgctatatacttaaatattaga-attata 47116 |||||| || | || |||||| | | |||| |||||| | |||||| | |||||| Sbjct 446 --ATATATATA-ATATATATTATATTACATATG-TATATATATGTATATTATATATTATA 501 Query 47117 gtaaaaatatttataatactatatat 47142 | | || |||||||| ||||||| Sbjct 502 -TGTATATTATTATAATATTATATAT 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 864921993617520