Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq155098 123 5e-23 seq300236 102 2e-16 seq87282 87.8 3e-12 >seq155098 Length=7669 Score = 123 bits (136), Expect = 5e-23 Identities = 171/236 (72%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGT---AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363 || |||| | |||| || || |||| ||| | ||| | ||| ||| || || | || Sbjct 7206 TAGCACCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGCTGTAG 7264 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || |||||||| |||| ||| || ||||||||||| | | | || || ||| Sbjct 7265 TCAGACAAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCA 7324 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || | |||||||| ||| | ||| || | | Sbjct 7325 GGAGGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGT 7384 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 7385 TCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440 >seq300236 Length=7644 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 7643 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 7584 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| || ||||| || || || Sbjct 7583 GAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGA 7524 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| |||||||| || || ||||| || | || | || Sbjct 7523 GGGATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCC 7464 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 7463 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq87282 Length=9775 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||| ||| || |||||| |||| | ||| ||||| ||||| || |||||||||| Sbjct 2587 TCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCTTTA 2528 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || || || || |||||||| ||| | ||| || | ||||| || ||||| ||| Sbjct 2527 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 2468 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | || | || || || || |||||||| || Sbjct 2467 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 2430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946475860093560