Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq155098 123 5e-23
seq300236 102 2e-16
seq87282 87.8 3e-12
>seq155098
Length=7669
Score = 123 bits (136), Expect = 5e-23
Identities = 171/236 (72%), Gaps = 5/236 (2%)
Strand=Plus/Plus
Query 192308 TACCACCTCTAAGACGT---AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAA 192363
|| |||| | |||| || || |||| ||| | ||| | ||| ||| || || | ||
Sbjct 7206 TAGCACCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGCTGTAG 7264
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
||||| || || |||||||| |||| ||| || ||||||||||| | | | || || |||
Sbjct 7265 TCAGACAAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCA 7324
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || |||||||| ||||| || || || | |||||||| ||| | ||| || | |
Sbjct 7325 GGAGGAATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGT 7384
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| ||||| || || || | || || | ||| |||||||| ||
Sbjct 7385 TCGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440
>seq300236
Length=7644
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || | ||| | |||||| ||| || || |||
Sbjct 7643 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 7584
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| ||||| || |||||||| || ||||| || || ||
Sbjct 7583 GAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGA 7524
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || ||||| |||||||| || || ||||| || | || | ||
Sbjct 7523 GGGATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCC 7464
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || ||||| |||||||||||||| | || || | ||| |||||||||
Sbjct 7463 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq87282
Length=9775
Score = 87.8 bits (96), Expect = 3e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441
|| |||| ||| || |||||| |||| | ||| ||||| ||||| || ||||||||||
Sbjct 2587 TCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCTTTA 2528
Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501
|| || || || |||||||| ||| | ||| || | ||||| || ||||| |||
Sbjct 2527 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 2468
Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || | || | || || || || |||||||| ||
Sbjct 2467 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 2430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946475860093560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |