Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq87282 100 5e-16
seq300236 84.2 4e-11
>seq87282
Length=9775
Score = 100 bits (110), Expect = 5e-16
Identities = 118/160 (74%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| |||| ||| || |||||| | || | ||| ||||||||||| || ||||||||
Sbjct 2589 CGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCTT 2530
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
|||| || || || |||||||| ||| ||||| || | ||||| || ||||| |
Sbjct 2529 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGA 2470
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|||| || | || | || || ||||| |||||||| ||
Sbjct 2469 TGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 2430
>seq300236
Length=7644
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| |||||||| || || | || | || | ||| | |||||| || || || ||
Sbjct 7643 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 7584
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || | || |||| ||||| || ||||| || || ||||| ||||| ||
Sbjct 7583 GAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGA 7524
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || ||||| |||||||| || || ||||| || || || | ||
Sbjct 7523 GGGATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCC 7464
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || ||||| |||||||||||||| | || || | || |||||||||
Sbjct 7463 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 870191968843800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |