Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021298.1
Length=51252
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 172 2e-38
seq2939440 158 4e-34
seq2939619 140 1e-28
seq2613054 118 3e-22
seq1566616 98.7 3e-16
seq2908808 91.5 5e-14
seq2955694 86.0 2e-12
seq2832633 86.0 2e-12
>seq308140
Length=1303
Score = 172 bits (190), Expect = 2e-38
Identities = 181/238 (76%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561
|||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| |
Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191
Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621
|| ||| ||||||||||| |||||||||||| | || || || |||||||||||
Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131
Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681
||| | || || || || ||||| ||| |||||||| ||| ||||| |||| ||
Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71
Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739
|||| |||| |||||||| ||||| ||||||||||| || || || | ||||
Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13
Score = 95.1 bits (104), Expect = 4e-15
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595
|| |||||||| | |||||||| ||||| ||||| ||||| || |||| ||| ||
Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142
Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655
|||||||||||| |||||||| ||||| || | || | |||||| || || || | |||
Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082
Query 39656 GA 39657
||
Sbjct 1081 GA 1080
>seq2939440
Length=415
Score = 158 bits (174), Expect = 4e-34
Identities = 188/253 (74%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40452 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAA--GTCGA 40509
||||| ||| || ||||||| |||||| | | || |||| ||| || |||||
Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195
Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569
||||| ||||||||||| || || || |||||||||||||||||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135
Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40629
||||||||||| |||||||| ||| | ||||| || |||||||||||||| | |
Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75
Query 40630 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40689
| || || ||||| || ||| |||||||| | ||| ||||| |||| |||||| |
Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40690 CGACGAGGAAGTA 40702
||| ||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 140 bits (154), Expect = 1e-28
Identities = 184/253 (73%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40452 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40509
||||||||| || ||||| | ||||||| | |||| || ||| ||||||||
Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195
Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569
||||| ||||||||||| || || || ||||||||||| || ||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135
Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40629
|||| |||||| |||||||||||| | |||||||| |||| ||| || || | |
Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75
Query 40630 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40689
| || || || || || ||| |||||||| | ||| ||||| |||| |||||| |
Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40690 CGACGAGGAAGTA 40702
||| ||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2613054
Length=182
Score = 118 bits (130), Expect = 3e-22
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 40544 CAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40603
||||||||| ||||| | || ||| ||||||||||| |||||||||||| | ||
Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123
Query 40604 GTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTC 40663
||||| |||||||| ||||| | || || || || ||||| || ||||||||
Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63
Query 40664 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGAT 40723
||| ||||| |||| |||||| |||| |||||||| ||||| |||||||||||
Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3
>seq1566616
Length=125
Score = 98.7 bits (108), Expect = 3e-16
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561
|||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| |
Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46
Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40595
|| ||| ||||||||||| ||||||||||||
Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12
>seq2908808
Length=346
Score = 91.5 bits (100), Expect = 5e-14
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 39539 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39598
|||||||| |||||||||| ||||| ||||| || || || |||| ||| || ||
Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182
Query 39599 GAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAG 39658
||||||||| || ||||| ||||| |||| || | |||||| || || || | |||||
Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122
Query 39659 CTGGAAGGTCGGGTCCAG 39676
| ||||||| ||||
Sbjct 121 GCCGTAGGTCGGTGCCAG 104
>seq2955694
Length=463
Score = 86.0 bits (94), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595
|| |||||||| | ||||| ||||| || ||||| || || || | || ||| ||
Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176
Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655
||||||||||| || ||||||||||| |||| || | |||||| ||||| || | |||
Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116
Query 39656 GA 39657
||
Sbjct 115 GA 114
>seq2832633
Length=255
Score = 86.0 bits (94), Expect = 2e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595
|| |||||||| | |||||||| ||||| ||||| || || || | || ||| ||
Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80
Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655
||||||||||| |||||||| ||||| |||| || | |||||| || || || | |||
Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140
Query 39656 GA 39657
||
Sbjct 141 GA 142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157874149910548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |