Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq308140 172 2e-38 seq2939440 158 4e-34 seq2939619 140 1e-28 seq2613054 118 3e-22 seq1566616 98.7 3e-16 seq2908808 91.5 5e-14 seq2955694 86.0 2e-12 seq2832633 86.0 2e-12 >seq308140 Length=1303 Score = 172 bits (190), Expect = 2e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| | Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || ||| ||||||||||| |||||||||||| | || || || ||||||||||| Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | || || || || ||||| ||| |||||||| ||| ||||| |||| || Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 Score = 95.1 bits (104), Expect = 4e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595 || |||||||| | |||||||| ||||| ||||| ||||| || |||| ||| || Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142 Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 |||||||||||| |||||||| ||||| || | || | |||||| || || || | ||| Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082 Query 39656 GA 39657 || Sbjct 1081 GA 1080 >seq2939440 Length=415 Score = 158 bits (174), Expect = 4e-34 Identities = 188/253 (74%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40452 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAA--GTCGA 40509 ||||| ||| || ||||||| |||||| | | || |||| ||| || ||||| Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195 Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569 ||||| ||||||||||| || || || |||||||||||||||||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135 Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40629 ||||||||||| |||||||| ||| | ||||| || |||||||||||||| | | Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75 Query 40630 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40689 | || || ||||| || ||| |||||||| | ||| ||||| |||| |||||| | Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40690 CGACGAGGAAGTA 40702 ||| |||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 140 bits (154), Expect = 1e-28 Identities = 184/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40452 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40509 ||||||||| || ||||| | ||||||| | |||| || ||| |||||||| Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195 Query 40510 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGT 40569 ||||| ||||||||||| || || || ||||||||||| || ||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135 Query 40570 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40629 |||| |||||| |||||||||||| | |||||||| |||| ||| || || | | Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75 Query 40630 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40689 | || || || || || ||| |||||||| | ||| ||||| |||| |||||| | Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40690 CGACGAGGAAGTA 40702 ||| |||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2613054 Length=182 Score = 118 bits (130), Expect = 3e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 40544 CAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40603 ||||||||| ||||| | || ||| ||||||||||| |||||||||||| | || Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123 Query 40604 GTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTC 40663 ||||| |||||||| ||||| | || || || || ||||| || |||||||| Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63 Query 40664 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGAT 40723 ||| ||||| |||| |||||| |||| |||||||| ||||| ||||||||||| Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3 >seq1566616 Length=125 Score = 98.7 bits (108), Expect = 3e-16 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| | Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40595 || ||| ||||||||||| |||||||||||| Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12 >seq2908808 Length=346 Score = 91.5 bits (100), Expect = 5e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 39539 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39598 |||||||| |||||||||| ||||| ||||| || || || |||| ||| || || Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182 Query 39599 GAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGAG 39658 ||||||||| || ||||| ||||| |||| || | |||||| || || || | ||||| Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122 Query 39659 CTGGAAGGTCGGGTCCAG 39676 | ||||||| |||| Sbjct 121 GCCGTAGGTCGGTGCCAG 104 >seq2955694 Length=463 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595 || |||||||| | ||||| ||||| || ||||| || || || | || ||| || Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176 Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 ||||||||||| || ||||||||||| |||| || | |||||| ||||| || | ||| Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116 Query 39656 GA 39657 || Sbjct 115 GA 114 >seq2832633 Length=255 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39536 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39595 || |||||||| | |||||||| ||||| ||||| || || || | || ||| || Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80 Query 39596 ACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39655 ||||||||||| |||||||| ||||| |||| || | |||||| || || || | ||| Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140 Query 39656 GA 39657 || Sbjct 141 GA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157874149910548