Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq308140 172 2e-38 seq2939440 158 4e-34 seq2939619 140 1e-28 seq2613054 118 3e-22 seq1566616 98.7 3e-16 seq2908808 87.8 6e-13 seq2955694 80.6 8e-11 seq2832633 80.6 8e-11 >seq308140 Length=1303 Score = 172 bits (190), Expect = 2e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| | Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || ||| ||||||||||| |||||||||||| | || || || ||||||||||| Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | || || || || ||||| ||| |||||||| ||| ||||| |||| || Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 |||| |||| |||||||| ||||| ||||||||||| || || || | |||| Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 Score = 89.7 bits (98), Expect = 2e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 || |||||||| | |||||||| ||||| ||||| ||||| || |||| ||| || Sbjct 1201 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCCCGACGCAGCATGTCCGCACC 1142 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 |||||||||||| |||||||| ||||| || | || | ||| || || || || | ||| Sbjct 1141 ACCGAGGGTGTAACCGGCCATTACCTGGGCGATCTGCATCACCTGTTCTTGATACAGGAT 1082 Query 39944 GA 39945 || Sbjct 1081 GA 1080 >seq2939440 Length=415 Score = 158 bits (174), Expect = 4e-34 Identities = 188/253 (74%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40740 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAA--GTCGA 40797 ||||| ||| || ||||||| |||||| | | || |||| ||| || ||||| Sbjct 252 CCGTATTTCTCGGCCACGTACTCGATCACGCGGTCGCG--GCCGTCCATGCAAAAGTCGA 195 Query 40798 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40857 ||||| ||||||||||| || || || |||||||||||||||||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGCAGGTCAT 135 Query 40858 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40917 ||||||||||| |||||||| ||| | ||||| || |||||||||||||| | | Sbjct 134 ATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCGGCACCTG 75 Query 40918 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40977 | || || ||||| || ||| |||||||| | ||| ||||| |||| |||||| | Sbjct 74 ACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40978 CGACGAGGAAGTA 40990 ||| |||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 140 bits (154), Expect = 1e-28 Identities = 184/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40740 CCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40797 ||||||||| || ||||| | ||||||| | |||| || ||| |||||||| Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195 Query 40798 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40857 ||||| ||||||||||| || || || ||||||||||| || ||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135 Query 40858 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40917 |||| |||||| |||||||||||| | |||||||| |||| ||| || || | | Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75 Query 40918 AGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40977 | || || || || || ||| |||||||| | ||| ||||| |||| |||||| | Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40978 CGACGAGGAAGTA 40990 ||| |||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2613054 Length=182 Score = 118 bits (130), Expect = 3e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 40832 CAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40891 ||||||||| ||||| | || ||| ||||||||||| |||||||||||| | || Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123 Query 40892 GTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTC 40951 ||||| |||||||| ||||| | || || || || ||||| || |||||||| Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63 Query 40952 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGAT 41011 ||| ||||| |||| |||||| |||| |||||||| ||||| ||||||||||| Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3 >seq1566616 Length=125 Score = 98.7 bits (108), Expect = 3e-16 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||| ||||| ||||||||||| || || || |||||||||||||| ||||| | Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40883 || ||| ||||||||||| |||||||||||| Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12 >seq2908808 Length=346 Score = 87.8 bits (96), Expect = 6e-13 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 39827 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39886 |||||||| |||||||||| ||||| ||||| || || || |||| ||| || || Sbjct 241 CTTGGCCATTTCCTCGGGCTTTTTCTTACCCATGGCGCGACGCAGCATGTCTGCGCCGCC 182 Query 39887 GAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGATGAG 39946 ||||||||| || ||||| ||||| |||| || | ||| || || || || | ||||| Sbjct 181 GAGGGTGTAACCCGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGATGAT 122 Query 39947 CTGGAAGGTCGGGTCCAG 39964 | ||||||| |||| Sbjct 121 GCCGTAGGTCGGTGCCAG 104 >seq2955694 Length=463 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 || |||||||| | ||||| ||||| || ||||| || || || | || ||| || Sbjct 235 CTGCTTGGCCATTTCTTCGGGTTTCTTTTTACCCATGGCGCGACGCAACATGTCCGCGCC 176 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 ||||||||||| || ||||||||||| |||| || | ||| || ||||| || | ||| Sbjct 175 GCCGAGGGTGTAGCCCGCCATGACCTGGGCAATCTGCATCACCTGTTCCTGATACAGGAT 116 Query 39944 GA 39945 || Sbjct 115 GA 114 >seq2832633 Length=255 Score = 80.6 bits (88), Expect = 8e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39824 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39883 || |||||||| | |||||||| ||||| ||||| || || || | || ||| || Sbjct 21 CTGCTTGGCCATTTCTTCGGGCTTTTTCTTACCCATGGCGCGACGCAACATGTCCGCGCC 80 Query 39884 ACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACTTGCTCCTGGTAGATGAT 39943 ||||||||||| |||||||| ||||| |||| || | ||| || || || || | ||| Sbjct 81 GCCGAGGGTGTAACCGGCCATCACCTGGGCAATCTGCATCACCTGTTCTTGATACAGGAT 140 Query 39944 GA 39945 || Sbjct 141 GA 142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158798940885148