Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 168 2e-37
seq2939440 149 2e-31
seq2939619 136 1e-27
seq2613054 113 1e-20
seq1566616 93.3 1e-14
>seq308140
Length=1303
Score = 168 bits (186), Expect = 2e-37
Identities = 180/238 (76%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| |
Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
|| ||| ||||||||||| |||||||||||| | || || || |||||||||||
Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429
||| | || || || || ||||| ||| || ||||| ||| ||||| |||| ||
Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71
Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487
|||| |||| |||||||| ||||||||||||||||| || || || | ||||
Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13
>seq2939440
Length=415
Score = 149 bits (164), Expect = 2e-31
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310
||||||| ||||| ||||||||||| || || || ||||||||||| |||||||| |
Sbjct 201 AAGTCGACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGC 142
Query 40311 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40370
|| | | ||||||||||| |||||||| ||| | ||||| || ||||||||||||
Sbjct 141 AGGTCATATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCG 82
Query 40371 GCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAG 40430
|| | || ||||| ||||| || ||| || ||||| | ||| ||||| |||| |||
Sbjct 81 GCACCTGACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAG 22
Query 40431 TCCGCGACGACGAGGAAGTA 40450
||| |||| ||||||||
Sbjct 21 TCCATCACGATCAGGAAGTA 2
>seq2939619
Length=415
Score = 136 bits (150), Expect = 1e-27
Identities = 183/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 40200 CCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40257
||||||||| || ||||| | ||| ||| | |||| || ||| ||||||||
Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195
Query 40258 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGT 40317
||||| ||||||||||| || || || |||||||||||||| ||||| | || | |
Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135
Query 40318 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40377
|||| |||||| |||||||||||| | |||||||| |||| ||| || || | |
Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75
Query 40378 AGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40437
| || || || || || ||| || ||||| | ||| ||||| |||| |||||| |
Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15
Query 40438 CGACGAGGAAGTA 40450
||| ||||||||
Sbjct 14 CGATCAGGAAGTA 2
>seq2613054
Length=182
Score = 113 bits (124), Expect = 1e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 40292 CAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40351
|||||| || ||||| | || ||| ||||||||||| |||||||||||| | ||
Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123
Query 40352 GTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTC 40411
||||| |||||||| ||||| | || || || || ||||| || || |||||
Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63
Query 40412 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGAT 40471
||| ||||| |||| |||||| |||| |||||||| |||||||||||||||||
Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3
>seq1566616
Length=125
Score = 93.3 bits (102), Expect = 1e-14
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| |
Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343
|| ||| ||||||||||| ||||||||||||
Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 157334688508698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |