Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq308140 168 2e-37 seq2939440 149 2e-31 seq2939619 136 1e-27 seq2613054 113 1e-20 seq1566616 93.3 1e-14 >seq308140 Length=1303 Score = 168 bits (186), Expect = 2e-37 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| | Sbjct 250 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 191 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || ||| ||||||||||| |||||||||||| | || || || ||||||||||| Sbjct 190 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCACATAAGCCACCAGCGAACC 131 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | || || || || ||||| ||| || ||||| ||| ||||| |||| || Sbjct 130 GGCACCCGAACCACGGCCTGGGCCTACCGGCACGCCGTTGCTCTTAGCCCACTGGATAAA 71 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 |||| |||| |||||||| ||||||||||||||||| || || || | |||| Sbjct 70 GTCCATTACGATCAGGAAGTAACCGGGGAACCCCATCTGGATAATGATATCCAGCTCG 13 >seq2939440 Length=415 Score = 149 bits (164), Expect = 2e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310 ||||||| ||||| ||||||||||| || || || ||||||||||| |||||||| | Sbjct 201 AAGTCGACGTCGAAGTCGGGCATGGAGACCCGTTCCGGGTTCAGGAACCGCTCGAACAGC 142 Query 40311 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40370 || | | ||||||||||| |||||||| ||| | ||||| || |||||||||||| Sbjct 141 AGGTCATATTCCAGCGGGTCAAGGTCGGTAATCTTCTGAACGTAAGCCACCAGCGAACCG 82 Query 40371 GCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAG 40430 || | || ||||| ||||| || ||| || ||||| | ||| ||||| |||| ||| Sbjct 81 GCACCTGACCCCCGGCCAGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAG 22 Query 40431 TCCGCGACGACGAGGAAGTA 40450 ||| |||| |||||||| Sbjct 21 TCCATCACGATCAGGAAGTA 2 >seq2939619 Length=415 Score = 136 bits (150), Expect = 1e-27 Identities = 183/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 40200 CCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGACGCCGGTCATC--GAAGTCGA 40257 ||||||||| || ||||| | ||| ||| | |||| || ||| |||||||| Sbjct 252 CCGTACTTCTCGGCCACGTATTCGATCACCCGATCGCGAC--CGTCCATGCAGAAGTCGA 195 Query 40258 TGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGT 40317 ||||| ||||||||||| || || || |||||||||||||| ||||| | || | | Sbjct 194 CGTCGAAGTCGGGCATGGATACACGTTCCGGGTTCAGGAAGCGTTCGAACAGCAGGTCAT 135 Query 40318 GCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAG 40377 |||| |||||| |||||||||||| | |||||||| |||| ||| || || | | Sbjct 134 ATTCCAACGGGTCAAGGTCGGTGATCTTCTGCACGTAGGCCACCAACGAGCCCGCACCTG 75 Query 40378 AGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGA 40437 | || || || || || ||| || ||||| | ||| ||||| |||| |||||| | Sbjct 74 ACCCACGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATCA 15 Query 40438 CGACGAGGAAGTA 40450 ||| |||||||| Sbjct 14 CGATCAGGAAGTA 2 >seq2613054 Length=182 Score = 113 bits (124), Expect = 1e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 40292 CAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGAC 40351 |||||| || ||||| | || ||| ||||||||||| |||||||||||| | || Sbjct 182 CAGGAACCGTTCGAACAGCAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATCTTCTGCAC 123 Query 40352 GTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTC 40411 ||||| |||||||| ||||| | || || || || ||||| || || ||||| Sbjct 122 ATAGGCCACCAGCGACCCGGCACCCGATCCACGGCCTGGGCCTACGGGCACGCCGTTGCT 63 Query 40412 CTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGAT 40471 ||| ||||| |||| |||||| |||| |||||||| ||||||||||||||||| Sbjct 62 CTTGGCCCACTGGATAAAGTCCATCACGATCAGGAAGTAACCGGGGAACCCCATCTGGAT 3 >seq1566616 Length=125 Score = 93.3 bits (102), Expect = 1e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||| ||||| ||||||||||| || || || ||||||||||| || ||||| | Sbjct 105 GAAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAG 46 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343 || ||| ||||||||||| |||||||||||| Sbjct 45 CAGGTCGTATTCCAGCGGGTCAAGGTCGGTGATC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157334688508698