Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq3088503 244 2e-60 seq3088488 239 1e-58 seq3076919 96.9 8e-16 >seq3088503 Length=21467 Score = 244 bits (270), Expect = 2e-60 Identities = 820/1255 (65%), Gaps = 35/1255 (3%) Strand=Plus/Minus Query 10369 CCTTCGAGGGGTTCGTTATCGAGCGCGTGAAGGCAGGCCCATGCGAGGTCAGCGTGGCCG 10428 || || || |||||||| | | ||||||| ||||| || ||||| || |||||| Sbjct 11497 CCCTCAAGCGGTTCGTTTTGCAATGCGTGAAATAGCGCCCAGGCCAGGTCGGCATGGCCG 11438 Query 10429 ATTTCTTCGTTACGCGCGGCGGTGTAGGTCATCTTCGTGCCGCTCGGCGTCATGGCTCGG 10488 | | ||||| ||| | ||||||||||| || |||| | || | | | Sbjct 11437 GTGTTGTCGTTGCGCCCTGCGGTGTAGGTGTACTGGCGACCGCCTGCGGTGACCGTCTTG 11378 Query 10489 CGGATGGACAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTT 10548 ||||| | || | ||| ||||| | ||||||| || |||||||| ||||| || Sbjct 11377 CGGATCGCCATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCG 11318 Query 10549 TTCCCGATCACCGACAT-GCCTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGAGTAATT 10607 || |||||| | ||| | | ||||| || ||||| |||| ||||||||||| || | Sbjct 11317 TTATGGATCAC-GTCATAGGCCTTCAGCACCAGGCGTGTTTTGACTTCGGGCGAATAGCT 11259 Query 10608 GATCGGTACGACGCGCGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCC 10667 || | || |||||||||||||||||| ||||| ||||||| ||| | || Sbjct 11258 GAAGGTGGTCACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGCCC 11199 Query 10668 GGTCGTATCGATCGCGATATAGGTCACGTGGTAGCGCT-GC-GTCAATTCGCGGATTTTC 10725 ||| ||| ||| ||||||||||||| |||||| | || | | || ||| Sbjct 11198 GGTGACATCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTT--GATAAAT 11141 Query 10726 TCCGCCTGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTT 10785 ||||||| | | ||||| |||||| | | ||||| || || || |||||||| Sbjct 11140 GCCGCCTGGGCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTG 11081 Query 10786 CCGTTCGGCTGCTCGGGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGGCA 10845 ||| ||| | ||||| || | ||| || ||||| | || || || || Sbjct 11080 CCGCCCGGTACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGGTTTCCGCT 11021 Query 10846 GGGTCGTAGCCGATCCATACCGG-CTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTTCA 10903 ||||||||||||||||||||| | | || ||||||||||| || | | || ||||| Sbjct 11020 GGGTCGTAGCCGATCCATACCTGACGGTCA-CCGAACGGCCGCATGGCG-AATGGCTTGT 10963 Query 10904 CGTCC---GTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGAGCCGGAAGGCGA 10960 |||| | ||| | |||| ||||||||||| ||| | | || || | Sbjct 10962 AGTCCTCTGCCCATTCAACCCAACTGTCGACCATGCAGCTCTGCA------GCAACGCCA 10909 Query 10961 AC--ACCGATGAGGTGTC----GTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGG 11014 || | |||| | || ||| || |||| ||||| ||||||| |||| | Sbjct 10908 ACGGAAAGATGCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCT 10849 Query 11015 CGGGGCTGTTCGTTGAGCGCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGA 11071 | ||||||| | ||||| ||||| | || ||| | | ||| ||| Sbjct 10848 CAGGGCTGTACTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCG--TGCTC 10791 Query 11072 TGGCATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTG 11131 || | ||| | ||||||||||||||||| || ||| |||| ||||| || Sbjct 10790 TG-CGTCCAGGATGGTGACGATCTGCCGCCACAACCGGTCCTCGCAGAACCGCCCCTGTT 10732 Query 11132 CAAGCGACGTATGGGAAATGTCGATCTCGACGCGCT-CGTCGTCGGGACGGTCGCGGTTG 11190 |||| | ||||||| ||||| || | | | | || || | || | |||| Sbjct 10731 GGAGCGCCCCGTGGGAAACGTCGACCTTGGTGTGTTGCGCCG-CTGGCTTACCCTTGTTG 10673 Query 11191 AAGTCCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAG 11250 ||| | |||| ||||| || | ||||| || || | | | |||| ||||| |||||| Sbjct 10672 AAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAG 10613 Query 11251 TGCGTCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCA 11310 | || | ||| | | | ||| | ||||| ||| || |||||||||||||| || Sbjct 10612 TAGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCA 10553 Query 11311 AACTTGCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTG 11370 |||||| |||||| | || ||||| || | | ||||| ||||| ||||| || Sbjct 10552 AACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTA 10493 Query 11371 CGTGAACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCG 11430 || | | |||| ||||| |||| || || || ||||| | ||| || ||||| || Sbjct 10492 CGCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCC 10433 Query 11431 GTTAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGT 11490 || ||||| || | | | | |||||| |||||| ||| ||| |||| | Sbjct 10432 GTCAGCTCGACACCGATAACCTCACGGGCAAATGCCTGGATGTACCCGCGAAACAGATAG 10373 Query 11491 GCCT-GTGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCAC 11549 || | || | | || ||||| || |||||||| |||||||||||||| | Sbjct 10372 GCTTGGTTTTTCGAT-GCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAG 10314 Query 11550 GAGTGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATG 11604 | |||||| | || || || | || ||||||||||| || || |||||| Sbjct 10313 AAACGCCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATG 10259 Score = 187 bits (206), Expect = 5e-43 Identities = 587/895 (66%), Gaps = 37/895 (4%) Strand=Plus/Minus Query 13297 AAATTCGCGGTCGCGCCGAGCGTGCAACAAACGCTCGAAAAGCGCATTCAAGAATCGGCG 13356 ||||| || ||| || ||||| ||||| || ||||| || || || || || Sbjct 8669 AAATTTGCCACCGCCCCCAGCGTCACCCAAACCCTGGAAAACCGGATGCAGGAGTCCAGT 8610 Query 13357 GCGTTCCTGCAAAGCATCAACGTGCAGGGCGTGACCGAACAGATGGGCGAAAAGCTCGGC 13416 |||| || ||||||| | | ||||| |||| ||||||||||| || | ||| Sbjct 8609 CAGTTCTTGAGCGCCATCAACATCTACGGCGTCGCCGAGCAGATGGGCGAGAAAATTGGC 8550 Query 13417 CTGCTCATCGGCGCACCGATCGCGAGCACGACGGACACCA----CGAAGGGGGACCGGAT 13472 || |||||||| |||| ||| |||| || || || | | ||| | | || | Sbjct 8549 ATGGGCATCGGCGGGCCGAACGCCGGCACCACTGATACAAATACCAAAGAGCG--CGAAA 8492 Query 13473 CACGGTCGATCTGACCGACA-TGGACCCGAACGCT--TACGTCTGCGCGCAGACGAATTA 13529 | | ||| | | | ||| | || || || ||| ||||| ||||||| || | Sbjct 8491 CCAG--CGACATCAGC-ACACTCGAT--GACCGTGGCTACTTCTGCTCGCAGACCAACTT 8437 Query 13530 CGACACGCATTTGAAGTACAGCAAGCTCGATGCGTGGGCGCAGTTCCCGAATTTCCAGAC 13589 ||| || || | ||||||||| | ||||||||||| ||||||| | |||||| | Sbjct 8436 CGATACCCACCTCCGTTACAGCAAGTTGGATGCGTGGGCCAAGTTCCCCGACTTCCAGGC 8377 Query 13590 GATGGTGCGCGACGTGAACGCGACGCAACAAGCGCTCGATCGGATTCGAATCGGCTTCAA 13649 | || |||| | | || | || ||||| || || || | ||||| | || Sbjct 8376 CCGTATTCGTGACGCCATCCTGAAACGCCAGGCGCTGGACCGCATCCTGATCGGTTGGAA 8317 Query 13650 TGGTGTGGGCCGGGCTGCAACGTCCGATCGCACGAAGAACCCGAACCTCG--AAGATGTG 13707 || || | || || || |||||| | | | | || || || ||| | || || Sbjct 8316 CGGCGTCAGTCGCGCCGCGACGTCCAACCCAGCCACCAATCC--ACTTCGCCAGGACGTC 8259 Query 13708 AACAAGGGCTGGCTGCAGAAGTACCGCGATCAGGCGGGCGATCGGGTGATCAGCGAAG-G 13766 |||| || |||||||||||| |||| | | || || || || | |||| | Sbjct 8258 AACATTGGTTGGCTGCAGAAGATGCGCGCCGAAAACGCCGCCCGCGTCATGAAGGAAGTG 8199 Query 13767 GAAGAAGGGTTCGGGCAAGCTCGTGATCGGCGGCGCCGATGGCGATTACAAGAACCTCGA 13826 | ||||| | ||| ||| || ||||| | ||| | || | || |||||||| Sbjct 8198 GTCGAAGGCTCCGG-CAAAATCACCATCGGTG---CCGGTAAAGACTTCACCAACCTCGA 8143 Query 13827 CGCGCTCGTGTACGA----GGCGACGAATTCGCTGATCGAGCCGTGGTATGCGGAAAGCC 13882 ||| || || | | | || || ||| || | ||||||||| |||| || Sbjct 8142 CGCCCTGGTATTCAGCATGGTGGAAGAGTTC----ATTGCGCCGTGGTACCAGGAAGACC 8087 Query 13883 CGGAACTGGTCGTGCTGTGCGGCCGCGATACGCTCCTGGACAAGTATTTCCCGATCCTCG 13942 | || ||||| ||| | ||||| ||| | ||| |||||||||||||||||| || Sbjct 8086 CTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTATTTCCCGATCATCA 8027 Query 13943 ATCGCGACAACCCGCCGACGGAATCGCTCGCGGCCAGTATGGTCATCAGCCAGAAGCGCA 14002 | |||||| ||||||| ||| ||| || ||| ||| |||| ||| || |||||| Sbjct 8026 ACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACCAGTCAAAAGCGCT 7967 Query 14003 TCGGCAATCTGCAAGCCATGCGGGTGCCGTTCAT---GCCGCGCGGCAAGCTGTTCATCA 14059 | |||||| ||| |||| |||| ||||| | | | ||||||||| |||| ||| Sbjct 7966 TGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGGTTGCTGGTCA--- 7910 Query 14060 CCATCCCGAAAAACCTGTCGATCTACTGGCAAATCGGCGGCCGTCGGCGCGCGGTGATCG 14119 ||| | | |||||||||||||||||||||| ||| |||| || ||| | || ||| Sbjct 7909 CCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGCACCGTCGTCG 7850 Query 14120 ACAACCCGAAGCGCGATCAGGTCGAGTTCTTCGAATCGAGCAACGAGGCGTATGT 14174 |||| | ||||| || | |||| || ||| ||| ||| || || || || Sbjct 7849 ACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCGGTCAATGACGCATACGT 7795 Score = 91.5 bits (100), Expect = 3e-14 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 15540 CACGGTGGACCTGATCTGATGAAGGTA------CGCGCACAACAAAACGAAACCGTCGAC 15593 ||| ||||| |||||||||| || ||||| | |||||||| ||||||||| Sbjct 6486 CACCGTGGAGTTGATCTGATGGCCGTCGCCGTTCGCGCCAACCAAAACGACACCGTCGAC 6427 Query 15594 GCGCTCTGCTGGCGTTGGTACGGCCGCACCGATGGCGTGGTCGAGGCGGTGTTAGAGGCG 15653 ||||| |||||||| ||||||||||| | ||||| |||||| ||| | || || Sbjct 6426 GCGCTTTGCTGGCGGCACTACGGCCGCACTGCCGGCGTTACCGAGGCCGTGCTTGAAGCC 6367 Query 15654 AACCCGGGATTGGCCGATATCGGCCTGTTTCTCCCGC 15690 ||||| || ||||||| ||||| | | || |||| Sbjct 6366 AACCCCGGCCTGGCCGACCACGGCCCGATCCTGCCGC 6330 >seq3088488 Length=17142 Score = 239 bits (264), Expect = 1e-58 Identities = 466/673 (69%), Gaps = 24/673 (4%) Strand=Plus/Minus Query 26008 AGGAAGAGGCGGTGGCCTACCGGAAGAAGTTCGGTCAACGCGAAGTGATGGTGATCTGGC 26067 ||||||||| ||||| ||||| |||| |||||| |||||| |||||||||| |||| Sbjct 16138 AGGAAGAGGTAGTGGCGTACCGCGAGAACTTCGGTGCCCGCGAAATGATGGTGATTTGGC 16079 Query 26068 CGGATTTCGTCGCATGGGACGACGCCGCGTCGAAAGAGGTTGA-AGTGC--CCGCCGTAG 26124 |||| ||| | |||||| | | | || || | || || | ||||| | Sbjct 16078 CGGACTTCCTGAACTGGGACACTGTCACC---AACAAGACCGCCAGCGCTTCGGCCGTGG 16022 Query 26125 CGTATGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAACCGGCTGGCATAAGACGCTCT 26184 | || ||||||| ||||| |||||||| ||| | || || |||||||| || || | Sbjct 16021 CCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCAAGAGACGGGTTGGCATAAAACCCTGT 15962 Query 26185 CGAACGTCGCTGTGAATGGCGTCGAAGGGATCAGCAAGCCG--GTTTCGTGGGATTTGCA 26242 | ||||| || |||| |||||| || |||||| |||| || | |||||| |||| Sbjct 15961 CCAACGTGGCCGTGAGTGGCGTGACCGGTATCAGC--GCCGACGTGTTCTGGGATCTGCA 15904 Query 26243 GAACCCGGCGACCGATGCGGGTTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCG 26302 ||||| || ||||| || | ||||||| || | ||||| || ||||||||| Sbjct 15903 AAACCCAGCCACCGACGCCAACTACCTCAACAGCAACGACGTCACCACCCTGATCAACGC 15844 Query 26303 GAACGGCTTCCGATTCTGGGGCTCGCGCACG-GC-GTCCGACGATCCGCTGTTCGCGTTC 26360 ||||| || || |||||||| ||||| || || || || ||| ||||||| ||| Sbjct 15843 CAACGGTTTTCGCTTCTGGGGTAGCCGCACCTGCAGT--GATGACCCGTTGTTCGCCTTC 15786 Query 26361 GAAAACTACACGCGCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGATGGTC 26420 ||||||||||| ||||| |||||| | || || || || |||| |||||| || ||| Sbjct 15785 GAAAACTACACCCGCACCGCGCAGATCCTCGCGGACACCATGGGCGAAGCGCACATGTGG 15726 Query 26421 GTTATCGACGGCGCGATGATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCA 26480 | | ||| || | ||| | | || |||||| || |||| ||| | | ||| Sbjct 15725 GCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGCGACCTGGTCGAAGGCGTAAGCGCC 15666 Query 26481 AAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCG-ACGC 26539 || ||||| || ||||| || ||||| | ||||||||||| || | | | || | Sbjct 15665 AAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATCGGCGGC----AGTTGCTGGAACCC 15610 Query 26540 GGA--ACA-GAACGGCGTTGTGGCGCTGAAAGATGGCAAAGCGGT-GATCAATTACGACT 26595 ||| ||| ||| | | | || || | ||| |||| | | | ||||||||| Sbjct 15609 GGACGACATCAACACCAAAGACACCCTCAAGGCCGGC-AAGCTCTGGCTTGATTACGACT 15551 Query 26596 ACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAGTATC 26655 |||| || ||||| || || ||| ||||||| | |||||| |||||||||| || | Sbjct 15550 ACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCAGCGAATCACCGACCGTTACC 15491 Query 26656 TGGCCGATTTCGC 26668 || ||| ||||| Sbjct 15490 TGATCGACTTCGC 15478 Score = 84.2 bits (92), Expect = 5e-12 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 27323 CGAAAACACCCATACGCTCGATCAACCGATTCGTCAGGGCGACAACGAA-ATCAAGGCGA 27381 ||| |||||| | |||||| |||||| |||| || ||| || | ||||| | Sbjct 14789 CGAGAACACCGTCATTCTCGATACACCGATCCGTCGCGG-GACCACCAGCATCAACAGCA 14731 Query 27382 TCACGCTGCGCAAGCCGGGGTCCGGCGAACTGCGCGGCGTGTCGCTGTCCGATCTCGTGA 27441 |||| ||||||||||| |||||||| | ||||||||| ||| || || || Sbjct 14730 TCACACTGCGCAAGCCCAACTCCGGCGAGTTACGCGGCGTGAGCCTGGTAGAGCTGCTGC 14671 Query 27442 ACCTCGACGT-GTCAGCGCTGCACAAGGTGCTTCCGCGTATCACCACGCCGACGCTGACC 27500 | | || || | |||| ||| |||||| || |||||||||| |||||| | || ||| Sbjct 14670 AGATGGATGTCGCCAGC-CTGATCAAGGTTCTGCCGCGTATCAGCACGCCAAGCCTCACC 14612 Query 27501 GAAGCTGACGTGTCCAAGCTGGACCCGGCCGACCTGCTG 27539 | | || || || |||||||||||||||| ||| Sbjct 14611 GTCGTCGAAGTCGCCGGCATGGACCCGGCCGACCTACTG 14573 >seq3076919 Length=1925 Score = 96.9 bits (106), Expect = 8e-16 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1882 TGACCGTTACGGCGCCCCTGATCAGCTACTTCGGCAGTAAGTTTCGCGTCGCGCCGTGGG 1941 ||||| | || || || | ||| | ||| |||| ||||| || | |||||||||| Sbjct 1388 TGACCATAACCGCCCCGGTAATCCGGTACCACGGCGCCAAGTTCCGGCTTGCGCCGTGGG 1329 Query 1942 TGCTCTCGCACCTGCCGTCGCATGAAATCTACGTCGAACCGTTCGGTGGCTCGGCTGGTG 2001 | | ||| | || |||| ||| ||||| ||||||| ||| | || || | Sbjct 1328 TATTGCAACACTTCCCACCGCACACCTGCTATGTCGAGTCGTTCGGCGGCGCCGCCGGCG 1269 Query 2002 TGCTGCTGCAAAAGCCGCGAAGCCGTGTCGAGATTTACAACGATCTCGACGGCGAAATCG 2061 ||||| |||||||||| ||| || |||| | |||||||| ||||||||||| |||| Sbjct 1268 TGCTGATGCAAAAGCCCCGATCGTATGCCGAGGTGTACAACGACCTCGACGGCGATATCG 1209 Query 2062 TGAACCTATTCCGCGT 2077 ||||| |||| || || Sbjct 1208 TGAACTTATTTCGGGT 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109100673910144