Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021343.1
Length=35430
Score E
Sequences producing significant alignments: (Bits) Value
seq3088503 244 2e-60
seq3088488 239 1e-58
seq3076919 96.9 8e-16
>seq3088503
Length=21467
Score = 244 bits (270), Expect = 2e-60
Identities = 820/1255 (65%), Gaps = 35/1255 (3%)
Strand=Plus/Minus
Query 10369 CCTTCGAGGGGTTCGTTATCGAGCGCGTGAAGGCAGGCCCATGCGAGGTCAGCGTGGCCG 10428
|| || || |||||||| | | ||||||| ||||| || ||||| || ||||||
Sbjct 11497 CCCTCAAGCGGTTCGTTTTGCAATGCGTGAAATAGCGCCCAGGCCAGGTCGGCATGGCCG 11438
Query 10429 ATTTCTTCGTTACGCGCGGCGGTGTAGGTCATCTTCGTGCCGCTCGGCGTCATGGCTCGG 10488
| | ||||| ||| | ||||||||||| || |||| | || | | |
Sbjct 11437 GTGTTGTCGTTGCGCCCTGCGGTGTAGGTGTACTGGCGACCGCCTGCGGTGACCGTCTTG 11378
Query 10489 CGGATGGACAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTT 10548
||||| | || | ||| ||||| | ||||||| || |||||||| ||||| ||
Sbjct 11377 CGGATCGCCATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGCCGGCCG 11318
Query 10549 TTCCCGATCACCGACAT-GCCTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGAGTAATT 10607
|| |||||| | ||| | | ||||| || ||||| |||| ||||||||||| || |
Sbjct 11317 TTATGGATCAC-GTCATAGGCCTTCAGCACCAGGCGTGTTTTGACTTCGGGCGAATAGCT 11259
Query 10608 GATCGGTACGACGCGCGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCC 10667
|| | || |||||||||||||||||| ||||| ||||||| ||| | ||
Sbjct 11258 GAAGGTGGTCACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACCCAGCCC 11199
Query 10668 GGTCGTATCGATCGCGATATAGGTCACGTGGTAGCGCT-GC-GTCAATTCGCGGATTTTC 10725
||| ||| ||| ||||||||||||| |||||| | || | | || |||
Sbjct 11198 GGTGACATCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTT--GATAAAT 11141
Query 10726 TCCGCCTGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTT 10785
||||||| | | ||||| |||||| | | ||||| || || || ||||||||
Sbjct 11140 GCCGCCTGGGCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGCGGAATTTG 11081
Query 10786 CCGTTCGGCTGCTCGGGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGGCA 10845
||| ||| | ||||| || | ||| || ||||| | || || || ||
Sbjct 11080 CCGCCCGGTACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGGTTTCCGCT 11021
Query 10846 GGGTCGTAGCCGATCCATACCGG-CTTCCAGCCGAACGGCCG-ATCGAGCAACGGCTTCA 10903
||||||||||||||||||||| | | || ||||||||||| || | | || |||||
Sbjct 11020 GGGTCGTAGCCGATCCATACCTGACGGTCA-CCGAACGGCCGCATGGCG-AATGGCTTGT 10963
Query 10904 CGTCC---GTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGAGCCGGAAGGCGA 10960
|||| | ||| | |||| ||||||||||| ||| | | || || |
Sbjct 10962 AGTCCTCTGCCCATTCAACCCAACTGTCGACCATGCAGCTCTGCA------GCAACGCCA 10909
Query 10961 AC--ACCGATGAGGTGTC----GTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGG 11014
|| | |||| | || ||| || |||| ||||| ||||||| |||| |
Sbjct 10908 ACGGAAAGATGCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCT 10849
Query 11015 CGGGGCTGTTCGTTGAGCGCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGA 11071
| ||||||| | ||||| ||||| | || ||| | | ||| |||
Sbjct 10848 CAGGGCTGTACTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCG--TGCTC 10791
Query 11072 TGGCATCCTCGGCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTGGCGCCCGCGTG 11131
|| | ||| | ||||||||||||||||| || ||| |||| ||||| ||
Sbjct 10790 TG-CGTCCAGGATGGTGACGATCTGCCGCCACAACCGGTCCTCGCAGAACCGCCCCTGTT 10732
Query 11132 CAAGCGACGTATGGGAAATGTCGATCTCGACGCGCT-CGTCGTCGGGACGGTCGCGGTTG 11190
|||| | ||||||| ||||| || | | | | || || | || | ||||
Sbjct 10731 GGAGCGCCCCGTGGGAAACGTCGACCTTGGTGTGTTGCGCCG-CTGGCTTACCCTTGTTG 10673
Query 11191 AAGTCCGCGCCAGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAG 11250
||| | |||| ||||| || | ||||| || || | | | |||| ||||| ||||||
Sbjct 10672 AAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAG 10613
Query 11251 TGCGTCATCCGCAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGCA 11310
| || | ||| | | | ||| | ||||| ||| || |||||||||||||| ||
Sbjct 10612 TAGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCA 10553
Query 11311 AACTTGCTGACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGTG 11370
|||||| |||||| | || ||||| || | | ||||| ||||| ||||| ||
Sbjct 10552 AACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTA 10493
Query 11371 CGTGAACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCG 11430
|| | | |||| ||||| |||| || || || ||||| | ||| || ||||| ||
Sbjct 10492 CGCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTGGGCAATACGATGGGATCCCCC 10433
Query 11431 GTTAGCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGT 11490
|| ||||| || | | | | |||||| |||||| ||| ||| |||| |
Sbjct 10432 GTCAGCTCGACACCGATAACCTCACGGGCAAATGCCTGGATGTACCCGCGAAACAGATAG 10373
Query 11491 GCCT-GTGCGCGGCTCGCCGACAGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCAC 11549
|| | || | | || ||||| || |||||||| |||||||||||||| |
Sbjct 10372 GCTTGGTTTTTCGAT-GCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATCAAG 10314
Query 11550 GAGTGCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATG 11604
| |||||| | || || || | || ||||||||||| || || ||||||
Sbjct 10313 AAACGCCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATG 10259
Score = 187 bits (206), Expect = 5e-43
Identities = 587/895 (66%), Gaps = 37/895 (4%)
Strand=Plus/Minus
Query 13297 AAATTCGCGGTCGCGCCGAGCGTGCAACAAACGCTCGAAAAGCGCATTCAAGAATCGGCG 13356
||||| || ||| || ||||| ||||| || ||||| || || || || ||
Sbjct 8669 AAATTTGCCACCGCCCCCAGCGTCACCCAAACCCTGGAAAACCGGATGCAGGAGTCCAGT 8610
Query 13357 GCGTTCCTGCAAAGCATCAACGTGCAGGGCGTGACCGAACAGATGGGCGAAAAGCTCGGC 13416
|||| || ||||||| | | ||||| |||| ||||||||||| || | |||
Sbjct 8609 CAGTTCTTGAGCGCCATCAACATCTACGGCGTCGCCGAGCAGATGGGCGAGAAAATTGGC 8550
Query 13417 CTGCTCATCGGCGCACCGATCGCGAGCACGACGGACACCA----CGAAGGGGGACCGGAT 13472
|| |||||||| |||| ||| |||| || || || | | ||| | | || |
Sbjct 8549 ATGGGCATCGGCGGGCCGAACGCCGGCACCACTGATACAAATACCAAAGAGCG--CGAAA 8492
Query 13473 CACGGTCGATCTGACCGACA-TGGACCCGAACGCT--TACGTCTGCGCGCAGACGAATTA 13529
| | ||| | | | ||| | || || || ||| ||||| ||||||| || |
Sbjct 8491 CCAG--CGACATCAGC-ACACTCGAT--GACCGTGGCTACTTCTGCTCGCAGACCAACTT 8437
Query 13530 CGACACGCATTTGAAGTACAGCAAGCTCGATGCGTGGGCGCAGTTCCCGAATTTCCAGAC 13589
||| || || | ||||||||| | ||||||||||| ||||||| | |||||| |
Sbjct 8436 CGATACCCACCTCCGTTACAGCAAGTTGGATGCGTGGGCCAAGTTCCCCGACTTCCAGGC 8377
Query 13590 GATGGTGCGCGACGTGAACGCGACGCAACAAGCGCTCGATCGGATTCGAATCGGCTTCAA 13649
| || |||| | | || | || ||||| || || || | ||||| | ||
Sbjct 8376 CCGTATTCGTGACGCCATCCTGAAACGCCAGGCGCTGGACCGCATCCTGATCGGTTGGAA 8317
Query 13650 TGGTGTGGGCCGGGCTGCAACGTCCGATCGCACGAAGAACCCGAACCTCG--AAGATGTG 13707
|| || | || || || |||||| | | | | || || || ||| | || ||
Sbjct 8316 CGGCGTCAGTCGCGCCGCGACGTCCAACCCAGCCACCAATCC--ACTTCGCCAGGACGTC 8259
Query 13708 AACAAGGGCTGGCTGCAGAAGTACCGCGATCAGGCGGGCGATCGGGTGATCAGCGAAG-G 13766
|||| || |||||||||||| |||| | | || || || || | |||| |
Sbjct 8258 AACATTGGTTGGCTGCAGAAGATGCGCGCCGAAAACGCCGCCCGCGTCATGAAGGAAGTG 8199
Query 13767 GAAGAAGGGTTCGGGCAAGCTCGTGATCGGCGGCGCCGATGGCGATTACAAGAACCTCGA 13826
| ||||| | ||| ||| || ||||| | ||| | || | || ||||||||
Sbjct 8198 GTCGAAGGCTCCGG-CAAAATCACCATCGGTG---CCGGTAAAGACTTCACCAACCTCGA 8143
Query 13827 CGCGCTCGTGTACGA----GGCGACGAATTCGCTGATCGAGCCGTGGTATGCGGAAAGCC 13882
||| || || | | | || || ||| || | ||||||||| |||| ||
Sbjct 8142 CGCCCTGGTATTCAGCATGGTGGAAGAGTTC----ATTGCGCCGTGGTACCAGGAAGACC 8087
Query 13883 CGGAACTGGTCGTGCTGTGCGGCCGCGATACGCTCCTGGACAAGTATTTCCCGATCCTCG 13942
| || ||||| ||| | ||||| ||| | ||| |||||||||||||||||| ||
Sbjct 8086 CTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTATTTCCCGATCATCA 8027
Query 13943 ATCGCGACAACCCGCCGACGGAATCGCTCGCGGCCAGTATGGTCATCAGCCAGAAGCGCA 14002
| |||||| ||||||| ||| ||| || ||| ||| |||| ||| || ||||||
Sbjct 8026 ACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACCAGTCAAAAGCGCT 7967
Query 14003 TCGGCAATCTGCAAGCCATGCGGGTGCCGTTCAT---GCCGCGCGGCAAGCTGTTCATCA 14059
| |||||| ||| |||| |||| ||||| | | | ||||||||| |||| |||
Sbjct 7966 TGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGGTTGCTGGTCA--- 7910
Query 14060 CCATCCCGAAAAACCTGTCGATCTACTGGCAAATCGGCGGCCGTCGGCGCGCGGTGATCG 14119
||| | | |||||||||||||||||||||| ||| |||| || ||| | || |||
Sbjct 7909 CCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGCACCGTCGTCG 7850
Query 14120 ACAACCCGAAGCGCGATCAGGTCGAGTTCTTCGAATCGAGCAACGAGGCGTATGT 14174
|||| | ||||| || | |||| || ||| ||| ||| || || || ||
Sbjct 7849 ACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCGGTCAATGACGCATACGT 7795
Score = 91.5 bits (100), Expect = 3e-14
Identities = 114/157 (73%), Gaps = 6/157 (4%)
Strand=Plus/Minus
Query 15540 CACGGTGGACCTGATCTGATGAAGGTA------CGCGCACAACAAAACGAAACCGTCGAC 15593
||| ||||| |||||||||| || ||||| | |||||||| |||||||||
Sbjct 6486 CACCGTGGAGTTGATCTGATGGCCGTCGCCGTTCGCGCCAACCAAAACGACACCGTCGAC 6427
Query 15594 GCGCTCTGCTGGCGTTGGTACGGCCGCACCGATGGCGTGGTCGAGGCGGTGTTAGAGGCG 15653
||||| |||||||| ||||||||||| | ||||| |||||| ||| | || ||
Sbjct 6426 GCGCTTTGCTGGCGGCACTACGGCCGCACTGCCGGCGTTACCGAGGCCGTGCTTGAAGCC 6367
Query 15654 AACCCGGGATTGGCCGATATCGGCCTGTTTCTCCCGC 15690
||||| || ||||||| ||||| | | || ||||
Sbjct 6366 AACCCCGGCCTGGCCGACCACGGCCCGATCCTGCCGC 6330
>seq3088488
Length=17142
Score = 239 bits (264), Expect = 1e-58
Identities = 466/673 (69%), Gaps = 24/673 (4%)
Strand=Plus/Minus
Query 26008 AGGAAGAGGCGGTGGCCTACCGGAAGAAGTTCGGTCAACGCGAAGTGATGGTGATCTGGC 26067
||||||||| ||||| ||||| |||| |||||| |||||| |||||||||| ||||
Sbjct 16138 AGGAAGAGGTAGTGGCGTACCGCGAGAACTTCGGTGCCCGCGAAATGATGGTGATTTGGC 16079
Query 26068 CGGATTTCGTCGCATGGGACGACGCCGCGTCGAAAGAGGTTGA-AGTGC--CCGCCGTAG 26124
|||| ||| | |||||| | | | || || | || || | ||||| |
Sbjct 16078 CGGACTTCCTGAACTGGGACACTGTCACC---AACAAGACCGCCAGCGCTTCGGCCGTGG 16022
Query 26125 CGTATGCGGTCGGCCTGCGCGCGAAGATCGATCAACAAACCGGCTGGCATAAGACGCTCT 26184
| || ||||||| ||||| |||||||| ||| | || || |||||||| || || |
Sbjct 16021 CCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCAAGAGACGGGTTGGCATAAAACCCTGT 15962
Query 26185 CGAACGTCGCTGTGAATGGCGTCGAAGGGATCAGCAAGCCG--GTTTCGTGGGATTTGCA 26242
| ||||| || |||| |||||| || |||||| |||| || | |||||| ||||
Sbjct 15961 CCAACGTGGCCGTGAGTGGCGTGACCGGTATCAGC--GCCGACGTGTTCTGGGATCTGCA 15904
Query 26243 GAACCCGGCGACCGATGCGGGTTTCCTCAACGAGAATCAGGTCACGACGCTGATCAACCG 26302
||||| || ||||| || | ||||||| || | ||||| || |||||||||
Sbjct 15903 AAACCCAGCCACCGACGCCAACTACCTCAACAGCAACGACGTCACCACCCTGATCAACGC 15844
Query 26303 GAACGGCTTCCGATTCTGGGGCTCGCGCACG-GC-GTCCGACGATCCGCTGTTCGCGTTC 26360
||||| || || |||||||| ||||| || || || || ||| ||||||| |||
Sbjct 15843 CAACGGTTTTCGCTTCTGGGGTAGCCGCACCTGCAGT--GATGACCCGTTGTTCGCCTTC 15786
Query 26361 GAAAACTACACGCGCACGGCGCAGGTGCTGGCCGATACGATGGCCGAAGCACAGATGGTC 26420
||||||||||| ||||| |||||| | || || || || |||| |||||| || |||
Sbjct 15785 GAAAACTACACCCGCACCGCGCAGATCCTCGCGGACACCATGGGCGAAGCGCACATGTGG 15726
Query 26421 GTTATCGACGGCGCGATGATTCCGGCGCTACCGCGCGACGTGATCGAGGGCATCAACGCA 26480
| | ||| || | ||| | | || |||||| || |||| ||| | | |||
Sbjct 15725 GCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGCGACCTGGTCGAAGGCGTAAGCGCC 15666
Query 26481 AAAATGCGTGAAATGAAAACCAAGGGCCAGTTGATCGGCGGCTCGGCGTGGTTCG-ACGC 26539
|| ||||| || ||||| || ||||| | ||||||||||| || | | | || |
Sbjct 15665 AAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATCGGCGGC----AGTTGCTGGAACCC 15610
Query 26540 GGA--ACA-GAACGGCGTTGTGGCGCTGAAAGATGGCAAAGCGGT-GATCAATTACGACT 26595
||| ||| ||| | | | || || | ||| |||| | | | |||||||||
Sbjct 15609 GGACGACATCAACACCAAAGACACCCTCAAGGCCGGC-AAGCTCTGGCTTGATTACGACT 15551
Query 26596 ACACGCCGGTGCCCCCGCTGGAAAACCTCACGCTGCGCCAGAAGATCACCGACCAGTATC 26655
|||| || ||||| || || ||| ||||||| | |||||| |||||||||| || |
Sbjct 15550 ACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCAGCGAATCACCGACCGTTACC 15491
Query 26656 TGGCCGATTTCGC 26668
|| ||| |||||
Sbjct 15490 TGATCGACTTCGC 15478
Score = 84.2 bits (92), Expect = 5e-12
Identities = 153/219 (70%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 27323 CGAAAACACCCATACGCTCGATCAACCGATTCGTCAGGGCGACAACGAA-ATCAAGGCGA 27381
||| |||||| | |||||| |||||| |||| || ||| || | ||||| |
Sbjct 14789 CGAGAACACCGTCATTCTCGATACACCGATCCGTCGCGG-GACCACCAGCATCAACAGCA 14731
Query 27382 TCACGCTGCGCAAGCCGGGGTCCGGCGAACTGCGCGGCGTGTCGCTGTCCGATCTCGTGA 27441
|||| ||||||||||| |||||||| | ||||||||| ||| || || ||
Sbjct 14730 TCACACTGCGCAAGCCCAACTCCGGCGAGTTACGCGGCGTGAGCCTGGTAGAGCTGCTGC 14671
Query 27442 ACCTCGACGT-GTCAGCGCTGCACAAGGTGCTTCCGCGTATCACCACGCCGACGCTGACC 27500
| | || || | |||| ||| |||||| || |||||||||| |||||| | || |||
Sbjct 14670 AGATGGATGTCGCCAGC-CTGATCAAGGTTCTGCCGCGTATCAGCACGCCAAGCCTCACC 14612
Query 27501 GAAGCTGACGTGTCCAAGCTGGACCCGGCCGACCTGCTG 27539
| | || || || |||||||||||||||| |||
Sbjct 14611 GTCGTCGAAGTCGCCGGCATGGACCCGGCCGACCTACTG 14573
>seq3076919
Length=1925
Score = 96.9 bits (106), Expect = 8e-16
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 1882 TGACCGTTACGGCGCCCCTGATCAGCTACTTCGGCAGTAAGTTTCGCGTCGCGCCGTGGG 1941
||||| | || || || | ||| | ||| |||| ||||| || | ||||||||||
Sbjct 1388 TGACCATAACCGCCCCGGTAATCCGGTACCACGGCGCCAAGTTCCGGCTTGCGCCGTGGG 1329
Query 1942 TGCTCTCGCACCTGCCGTCGCATGAAATCTACGTCGAACCGTTCGGTGGCTCGGCTGGTG 2001
| | ||| | || |||| ||| ||||| ||||||| ||| | || || |
Sbjct 1328 TATTGCAACACTTCCCACCGCACACCTGCTATGTCGAGTCGTTCGGCGGCGCCGCCGGCG 1269
Query 2002 TGCTGCTGCAAAAGCCGCGAAGCCGTGTCGAGATTTACAACGATCTCGACGGCGAAATCG 2061
||||| |||||||||| ||| || |||| | |||||||| ||||||||||| ||||
Sbjct 1268 TGCTGATGCAAAAGCCCCGATCGTATGCCGAGGTGTACAACGACCTCGACGGCGATATCG 1209
Query 2062 TGAACCTATTCCGCGT 2077
||||| |||| || ||
Sbjct 1208 TGAACTTATTTCGGGT 1193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 109100673910144
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