Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq308140 93.3 4e-14 >seq308140 Length=1303 Score = 93.3 bits (102), Expect = 4e-14 Identities = 196/289 (68%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 105036 TTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCATG 105092 ||| |||| |||||| |||| |||| | | ||||||||||| || || || Sbjct 41 TTCCCCGGTTACTTCCTGATCGTAATGGACTTTATCCAGTGGGCTAAGAGCAACGGCGTG 100 Query 105093 CTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATC 105152 | || || || ||||||||||||| | || ||||| || | || || | | ||| Sbjct 101 CCGGTAGGCCCAGGCCGTGGTTCGGGTGCCGGTTCGCTGGTGGCTTATGTGCAGAAGATC 160 Query 105153 ACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGG 105212 ||||| || |||||| | | ||||||||| ||||||| |||||| | ||||| ||| Sbjct 161 ACCGACCTTGACCCGCTGGAATACGACCTGCTGTTCGAACGGTTCCTGAACCCGGAACGG 220 Query 105213 AAGAACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGA 105271 | | |||||| |||| ||||||| | ||| | | |||||| | || |||| Sbjct 221 GTTTCCATGCCCGACTTCGACGTCGACTT-CTGCATGGACGGTCGCGACCGCGTGATCGA 279 Query 105272 CTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 ||| | ||||| ||||||| | || ||| || |||| |||| Sbjct 280 ATACGTGGCCGAAAAATACGGCCGCAACGCCGTGAGCCAGATCATCACC 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438466245869880