Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021347.1
Length=142563
Score E
Sequences producing significant alignments: (Bits) Value
seq308140 93.3 4e-14
>seq308140
Length=1303
Score = 93.3 bits (102), Expect = 4e-14
Identities = 196/289 (68%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 105036 TTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCATG 105092
||| |||| |||||| |||| |||| | | ||||||||||| || || ||
Sbjct 41 TTCCCCGGTTACTTCCTGATCGTAATGGACTTTATCCAGTGGGCTAAGAGCAACGGCGTG 100
Query 105093 CTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACATC 105152
| || || || ||||||||||||| | || ||||| || | || || | | |||
Sbjct 101 CCGGTAGGCCCAGGCCGTGGTTCGGGTGCCGGTTCGCTGGTGGCTTATGTGCAGAAGATC 160
Query 105153 ACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCGG 105212
||||| || |||||| | | ||||||||| ||||||| |||||| | ||||| |||
Sbjct 161 ACCGACCTTGACCCGCTGGAATACGACCTGCTGTTCGAACGGTTCCTGAACCCGGAACGG 220
Query 105213 AAGAACTTCCCCGACATCGATCTCGACTTCCCGCA-GAAGCGTCGCGGCGAGGTCGTCGA 105271
| | |||||| |||| ||||||| | ||| | | |||||| | || ||||
Sbjct 221 GTTTCCATGCCCGACTTCGACGTCGACTT-CTGCATGGACGGTCGCGACCGCGTGATCGA 279
Query 105272 CTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320
||| | ||||| ||||||| | || ||| || |||| ||||
Sbjct 280 ATACGTGGCCGAAAAATACGGCCGCAACGCCGTGAGCCAGATCATCACC 328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438466245869880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |