Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq2799564 87.8 5e-13 >seq2799564 Length=235 Score = 87.8 bits (96), Expect = 5e-13 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 33249 CGCTGTGTGCAATCTGTCTCTGGCAACATCAGAGCAGTGGAACGATAAAGCA-ACAGGGG 33307 ||| ||| ||| ||| |||||| || || ||||||| || || ||| || || Sbjct 22 CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAA-GCAGACCGGCC 80 Query 33308 AAAAGAAAGAGCAGACAGAATGGCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGG 33367 | ||| ||| | || |||||||| |||||| || ||||| ||| | |||||| | | Sbjct 81 AGAAGGTCGAGAAAACCGAATGGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCG 140 Query 33368 CTGGCGAATACCTGCGCAAAGGCTCTCAGGTGTATGTAGAAGGAAAATTACGTACTCGCA 33427 | ||||| |||||||||||||| || ||||| || | ||||| ||| | | || ||| Sbjct 141 CCGGCGAGTACCTGCGCAAAGGTTCGCAGGTTTACATCGAAGGCAAACTGCAAACCCGCG 200 Query 33428 AATGG 33432 | ||| Sbjct 201 AGTGG 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146468394557148