Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021561.1 Length=37324 Score E Sequences producing significant alignments: (Bits) Value seq3083971 221 3e-53 seq3087344 190 5e-44 >seq3083971 Length=2830 Score = 221 bits (244), Expect = 3e-53 Identities = 479/705 (68%), Gaps = 29/705 (4%) Strand=Plus/Minus Query 32119 GTGAAAGTGCCTTGGAAATACGGCCCATACGAAACCACAGAAGAAGCGTTTAAGCGTCGC 32178 ||||| | || |||||||| ||||||||| ||||||| ||||| ||||| ||||||||| Sbjct 1848 GTGAAGGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTTCAAGCGTCGC 1789 Query 32179 GCACGTTCGCCTGAGGAATTCTCTGAAATCATCGGTCAAGACATGGCAGACGCTACAATG 32238 | ||| || || || ||||| |||||||||| ||| |||| |||||||| || Sbjct 1788 GGCCGTCCGGTGGATGAGTTCTCCCAAATCATCGGCGTTGACGTGGCCGACGCTACCCTG 1729 Query 32239 TCAGGTTGGATTGGTTACGC-ATTGAATGCACTACAAGGCGCAATCGGCTCTAACGCCGG 32297 ||| | || ||||| | | | || || | | ||| |||||||| ||||| || Sbjct 1728 GAAGGCTTCATCCACTACGCCACCGCA-GCTCTGCGTGCCGCGATCGGCTCCAACGCTGG 1670 Query 32298 CATGAACGTATCTGGCGAGCTTGCAACTGAAGGTAAGAAAGTTCTTACCAAAGGTTTGCG 32357 |||| || || | | | | | ||| || || ||||| || ||| || |||| Sbjct 1669 CATGGTTGTCTCGGCCAACATCGAAACCGACGGCAAGAAGACCCTGACCCGCGGCATGCG 1610 Query 32358 CACAATGGGCGACAAAGCATCATCT-ATCGCAATCTGGGTGATGGATTCAACGTCTTACT 32416 || | | |||||||| | || || || | ||||| ||| | ||| || | || | Sbjct 1609 CAAATTCGGCGACAA-GTTCGGTCGCATTGCCCTGTGGGTCATGCACTCATCGGCCTATT 1551 Query 32417 TTGACATCGTTGACGAGGCGATTGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTT 32476 | |||||||| ||||| ||||| | |||||| | || || ||||| || || || | | Sbjct 1550 TCGACATCGTGGACGAAGCGATCGCGAACAAGGTCTACGAGGAAGCCGGCGTAGTCATCT 1491 Query 32477 ACGGTGGTACACCTGGCACGCTTGGTAAGCCTGTGCTTGTTACTGACCAATGC-CCAGCA 32535 |||| ||| ||||||||||| || ||||| ||||| || || || || || || || Sbjct 1490 ACGGCGGTCTGCCTGGCACGCTGGGCAAGCCAGTGCTGGTGACCGA-CACCGCACCGGCT 1432 Query 32536 ACTAAGATTTTCGGTCTTGTAGCTGGC----GCGGTAATGGTTACTGAGTCTCAAGCGCC 32591 ||||||||| || |||| | || || || | || ||||| || ||||| Sbjct 1431 GACGTGATTTTCGGCCT----GCTGCCCAATGCCGTTGTGATCACCGAGTCGCAGGCGCC 1376 Query 32592 TGGTATGCGCTCTTACCAAATCGACGACCAAGA-AAACTTGGCTATCGGTTTCCGCGCTG 32650 || | || || ||| | | |||| |||| || |||||| ||||||| |||||| | Sbjct 1375 CGGCTTCCGGTCCTACGAGGTGAACGATGAAGAGAACCTTGGC-ATCGGTTACCGCGCAG 1317 Query 32651 AGGGCACAGCTAACGTTGAAGTACTTGGCTACAAATGGAAAGACA----AGGCGAT---- 32702 | ||||| | ||| | || || || ||||||| ||||| || | |||| | Sbjct 1316 AAGGCACCGTGAACATCGACGTGCTGGGCTACAGCTGGAAGGAAACCACTGGCGGTGCCA 1257 Query 32703 TACTAACCCTGGTGCTGCCGCCCTTGCTACCACAGCCAACTGGCAGAAGTACGCAACAAG 32762 | ||||||| ||||| ||| | | | ||||||||| ||| || | || Sbjct 1256 ACCCAACCCTG-----GCCGCTGTTGGTTCGGCCGCCAACTGGGTCAAGCACTCGGACAG 1202 Query 32763 CGACAAGGCAACAGCCGGCTTCATCATTACACTAACAACTACGCC 32807 | |||||| || |||||| | || ||||| || || || ||||| Sbjct 1201 CAACAAGGTCACCGCCGGCGTGATGATTACCCTGACCACCACGCC 1157 >seq3087344 Length=5003 Score = 190 bits (210), Expect = 5e-44 Identities = 568/861 (66%), Gaps = 18/861 (2%) Strand=Plus/Minus Query 31845 CCAAAGTAAGGA-ATAG--CAAATGGCTACTACAGTAAACTCTGATTTAGTAATCTACAA 31901 || ||||||||| || | | |||||||| || || ||| || | | |||||||| Sbjct 4297 CCCAAGTAAGGAGATTGACCCCATGGCTACAACCGTTAACAGCGACCTGATCATCTACAA 4238 Query 31902 TGACACGGCCCAGACTGCGTACCTAGAGCGCAACATGGACAACCTAGCTGTGTTCAATGA 31961 || ||| || || || ||||| ||||| | ||||||||| | ||||||||| | Sbjct 4237 CGATGAGGCGCAAACCGCATACCTGGAGCGTGTCCAGGACAACCTGGATGTGTTCAACGC 4178 Query 31962 AAACTCACGCGCTGCGATTGGCCTGAACTCTGAGCTAATCGAAGGTGACTTGAAGCTA-C 32020 | || || ||||| | ||| || ||||| |||||||| ||||| || | | Sbjct 4177 ATCGTCCAACGGCGCGATGGTGCTGGACAACGAGCTGATCGAAGGCGACTTCC-GCAAGC 4119 Query 32021 GCTCGTTCTACAAAGTGGGCGGCTCTATCGCTGACCGTGATGTGAATTCA-ACGGCTACC 32079 || || ||||||| || |||||||| | | | || || || || || ||||| | Sbjct 4118 GCGCGCTCTACAAGCTGAGCGGCTCTCTGGAGCATCGCGACGTCAACTCCGACGGCAAG- 4060 Query 32080 GTTGCAGGTATTAAGATTGCAGCGGATGAAATGGTATCAGTG--AAAGTGCCTTGGAAAT 32137 || | | | ||||| ||||| | | | | || | | |||| || ||||| | Sbjct 4059 GTAACTGCCAAGAAGAT--CAGCGCCGGCGAAGCTGTCGGCGTCAAAGCTCCCTGGAAGT 4002 Query 32138 ACGGCCCATACGAAACCACAGAAGAAGCGTTTAAGCGTCGCGCACGTTCGCCTGAGGAAT 32197 ||||||| || | ||||| ||||| || || ||||| |||| ||| || ||||| | Sbjct 4001 ACGGCCCGTATCAGACCACCGAAGAGGCCTTCAAGCGCCGCGGTCGTCCGGTCGAGGAGT 3942 Query 32198 TCTCTGAAATCATCGGTCAAGACATGGCAGACGCTACAATGTCAGGTTGGATTGGTTACG 32257 |||| | ||| |||| ||| | || || || || || ||| | || |||| Sbjct 3941 TCTCCCAGATCGTCGGCGCCGACGTTGCTGATGCGACCTTGGAAGGCTTCATCCAGTACG 3882 Query 32258 CATTGAATGCACTACAAGGCGCAATCGGCTCTAACGCCGGCATGAACGTATCTGGCGAGC 32317 || || || | | ||| |||||||| ||||| | |||| || || | | | Sbjct 3881 CAACTGCTGGCCTCCGTGCCGCCATCGGCTCCAACGCTGACATGGTGGTTTCGGCCAACA 3822 Query 32318 TTGCAACTGAAGGTAAGAAAGTTCTTACCAAAGGTTTGCGCACAATGGGCGACAAAGCAT 32377 | | ||| || || ||||| || || ||| |||| | | |||||||| | Sbjct 3821 TCGAAACCGACGGCAAGAAGACGCTGACTCGCGGTATGCGAAAGTTCGGCGACAAGT--T 3764 Query 32378 CATC--TATCGCAATCTGGGTGATGGATTCAACGTCTTACTTTGACATCGTTGACGAGGC 32435 | | ||| || | ||||| ||| | || | | ||||| |||||||| ||||| || Sbjct 3763 CGGCCGTATTGCTCTGTGGGTCATGCACTCCAGCGCCTACTTCGACATCGTCGACGAAGC 3704 Query 32436 GATTGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTTACGGTGGTACACCTGGCAC 32495 || ||||||| | || ||||||||||| |||||| | ||||| || || ||||| Sbjct 3703 CATCACCAACAAGATCTACGAAGAAGCTGGCGTTGTGATCTACGGCGGCCTGCCGGGCAC 3644 Query 32496 GCTTGGTAAGCCTGTGCTTGTTACTGACCAATGC-CCAGCAACTAAGATTTTCGGTCTTG 32554 | || |||||||| || || || || || || || || | ||| ||||| || Sbjct 3643 TTTGGGCAAGCCTGTACTGGTGACCGA-CACCGCGCCGGCGGATGTGATCTTCGGCCTGC 3585 Query 32555 TAGCTGGCGCGGTAATGGTTACTGAGTCTCAAGCGCCTGGTATGCGCTCTTACCAAATCG 32614 | | ||| |||| | || ||||| || ||||| || | || || ||| || | Sbjct 3584 TGCCAAACGCCGTAA-CATCACCGAGTCGCAGGCGCCGGGCTTCCGTTCCTACGAAGTGA 3526 Query 32615 ACGACCAAGAAAACTTGGCTATCGGTTTCCGCGCTGAGGGCACAGCTAACGTTGAAGTAC 32674 ||||| |||||||| || ||||| | |||||| || ||||| | || | || || | Sbjct 3525 ACGACGAAGAAAACCTGAGCATCGGCTACCGCGCGGAAGGCACCGTGAATATCGATGTGC 3466 Query 32675 TTGGCTACAAATGGAAAGACA 32695 | || |||| ||||||| || Sbjct 3465 TGGGTTACAGCTGGAAAGCCA 3445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114939187596452