Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021561.1
Length=37324
Score E
Sequences producing significant alignments: (Bits) Value
seq3083971 221 3e-53
seq3087344 190 5e-44
>seq3083971
Length=2830
Score = 221 bits (244), Expect = 3e-53
Identities = 479/705 (68%), Gaps = 29/705 (4%)
Strand=Plus/Minus
Query 32119 GTGAAAGTGCCTTGGAAATACGGCCCATACGAAACCACAGAAGAAGCGTTTAAGCGTCGC 32178
||||| | || |||||||| ||||||||| ||||||| ||||| ||||| |||||||||
Sbjct 1848 GTGAAGGCTCCGTGGAAATATGGCCCATACCAAACCACCGAAGAGGCGTTCAAGCGTCGC 1789
Query 32179 GCACGTTCGCCTGAGGAATTCTCTGAAATCATCGGTCAAGACATGGCAGACGCTACAATG 32238
| ||| || || || ||||| |||||||||| ||| |||| |||||||| ||
Sbjct 1788 GGCCGTCCGGTGGATGAGTTCTCCCAAATCATCGGCGTTGACGTGGCCGACGCTACCCTG 1729
Query 32239 TCAGGTTGGATTGGTTACGC-ATTGAATGCACTACAAGGCGCAATCGGCTCTAACGCCGG 32297
||| | || ||||| | | | || || | | ||| |||||||| ||||| ||
Sbjct 1728 GAAGGCTTCATCCACTACGCCACCGCA-GCTCTGCGTGCCGCGATCGGCTCCAACGCTGG 1670
Query 32298 CATGAACGTATCTGGCGAGCTTGCAACTGAAGGTAAGAAAGTTCTTACCAAAGGTTTGCG 32357
|||| || || | | | | | ||| || || ||||| || ||| || ||||
Sbjct 1669 CATGGTTGTCTCGGCCAACATCGAAACCGACGGCAAGAAGACCCTGACCCGCGGCATGCG 1610
Query 32358 CACAATGGGCGACAAAGCATCATCT-ATCGCAATCTGGGTGATGGATTCAACGTCTTACT 32416
|| | | |||||||| | || || || | ||||| ||| | ||| || | || |
Sbjct 1609 CAAATTCGGCGACAA-GTTCGGTCGCATTGCCCTGTGGGTCATGCACTCATCGGCCTATT 1551
Query 32417 TTGACATCGTTGACGAGGCGATTGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTT 32476
| |||||||| ||||| ||||| | |||||| | || || ||||| || || || | |
Sbjct 1550 TCGACATCGTGGACGAAGCGATCGCGAACAAGGTCTACGAGGAAGCCGGCGTAGTCATCT 1491
Query 32477 ACGGTGGTACACCTGGCACGCTTGGTAAGCCTGTGCTTGTTACTGACCAATGC-CCAGCA 32535
|||| ||| ||||||||||| || ||||| ||||| || || || || || || ||
Sbjct 1490 ACGGCGGTCTGCCTGGCACGCTGGGCAAGCCAGTGCTGGTGACCGA-CACCGCACCGGCT 1432
Query 32536 ACTAAGATTTTCGGTCTTGTAGCTGGC----GCGGTAATGGTTACTGAGTCTCAAGCGCC 32591
||||||||| || |||| | || || || | || ||||| || |||||
Sbjct 1431 GACGTGATTTTCGGCCT----GCTGCCCAATGCCGTTGTGATCACCGAGTCGCAGGCGCC 1376
Query 32592 TGGTATGCGCTCTTACCAAATCGACGACCAAGA-AAACTTGGCTATCGGTTTCCGCGCTG 32650
|| | || || ||| | | |||| |||| || |||||| ||||||| |||||| |
Sbjct 1375 CGGCTTCCGGTCCTACGAGGTGAACGATGAAGAGAACCTTGGC-ATCGGTTACCGCGCAG 1317
Query 32651 AGGGCACAGCTAACGTTGAAGTACTTGGCTACAAATGGAAAGACA----AGGCGAT---- 32702
| ||||| | ||| | || || || ||||||| ||||| || | |||| |
Sbjct 1316 AAGGCACCGTGAACATCGACGTGCTGGGCTACAGCTGGAAGGAAACCACTGGCGGTGCCA 1257
Query 32703 TACTAACCCTGGTGCTGCCGCCCTTGCTACCACAGCCAACTGGCAGAAGTACGCAACAAG 32762
| ||||||| ||||| ||| | | | ||||||||| ||| || | ||
Sbjct 1256 ACCCAACCCTG-----GCCGCTGTTGGTTCGGCCGCCAACTGGGTCAAGCACTCGGACAG 1202
Query 32763 CGACAAGGCAACAGCCGGCTTCATCATTACACTAACAACTACGCC 32807
| |||||| || |||||| | || ||||| || || || |||||
Sbjct 1201 CAACAAGGTCACCGCCGGCGTGATGATTACCCTGACCACCACGCC 1157
>seq3087344
Length=5003
Score = 190 bits (210), Expect = 5e-44
Identities = 568/861 (66%), Gaps = 18/861 (2%)
Strand=Plus/Minus
Query 31845 CCAAAGTAAGGA-ATAG--CAAATGGCTACTACAGTAAACTCTGATTTAGTAATCTACAA 31901
|| ||||||||| || | | |||||||| || || ||| || | | ||||||||
Sbjct 4297 CCCAAGTAAGGAGATTGACCCCATGGCTACAACCGTTAACAGCGACCTGATCATCTACAA 4238
Query 31902 TGACACGGCCCAGACTGCGTACCTAGAGCGCAACATGGACAACCTAGCTGTGTTCAATGA 31961
|| ||| || || || ||||| ||||| | ||||||||| | ||||||||| |
Sbjct 4237 CGATGAGGCGCAAACCGCATACCTGGAGCGTGTCCAGGACAACCTGGATGTGTTCAACGC 4178
Query 31962 AAACTCACGCGCTGCGATTGGCCTGAACTCTGAGCTAATCGAAGGTGACTTGAAGCTA-C 32020
| || || ||||| | ||| || ||||| |||||||| ||||| || | |
Sbjct 4177 ATCGTCCAACGGCGCGATGGTGCTGGACAACGAGCTGATCGAAGGCGACTTCC-GCAAGC 4119
Query 32021 GCTCGTTCTACAAAGTGGGCGGCTCTATCGCTGACCGTGATGTGAATTCA-ACGGCTACC 32079
|| || ||||||| || |||||||| | | | || || || || || ||||| |
Sbjct 4118 GCGCGCTCTACAAGCTGAGCGGCTCTCTGGAGCATCGCGACGTCAACTCCGACGGCAAG- 4060
Query 32080 GTTGCAGGTATTAAGATTGCAGCGGATGAAATGGTATCAGTG--AAAGTGCCTTGGAAAT 32137
|| | | | ||||| ||||| | | | | || | | |||| || ||||| |
Sbjct 4059 GTAACTGCCAAGAAGAT--CAGCGCCGGCGAAGCTGTCGGCGTCAAAGCTCCCTGGAAGT 4002
Query 32138 ACGGCCCATACGAAACCACAGAAGAAGCGTTTAAGCGTCGCGCACGTTCGCCTGAGGAAT 32197
||||||| || | ||||| ||||| || || ||||| |||| ||| || ||||| |
Sbjct 4001 ACGGCCCGTATCAGACCACCGAAGAGGCCTTCAAGCGCCGCGGTCGTCCGGTCGAGGAGT 3942
Query 32198 TCTCTGAAATCATCGGTCAAGACATGGCAGACGCTACAATGTCAGGTTGGATTGGTTACG 32257
|||| | ||| |||| ||| | || || || || || ||| | || ||||
Sbjct 3941 TCTCCCAGATCGTCGGCGCCGACGTTGCTGATGCGACCTTGGAAGGCTTCATCCAGTACG 3882
Query 32258 CATTGAATGCACTACAAGGCGCAATCGGCTCTAACGCCGGCATGAACGTATCTGGCGAGC 32317
|| || || | | ||| |||||||| ||||| | |||| || || | | |
Sbjct 3881 CAACTGCTGGCCTCCGTGCCGCCATCGGCTCCAACGCTGACATGGTGGTTTCGGCCAACA 3822
Query 32318 TTGCAACTGAAGGTAAGAAAGTTCTTACCAAAGGTTTGCGCACAATGGGCGACAAAGCAT 32377
| | ||| || || ||||| || || ||| |||| | | |||||||| |
Sbjct 3821 TCGAAACCGACGGCAAGAAGACGCTGACTCGCGGTATGCGAAAGTTCGGCGACAAGT--T 3764
Query 32378 CATC--TATCGCAATCTGGGTGATGGATTCAACGTCTTACTTTGACATCGTTGACGAGGC 32435
| | ||| || | ||||| ||| | || | | ||||| |||||||| ||||| ||
Sbjct 3763 CGGCCGTATTGCTCTGTGGGTCATGCACTCCAGCGCCTACTTCGACATCGTCGACGAAGC 3704
Query 32436 GATTGACAACAAGCTTTATGAAGAAGCTGGTGTTGTGGTTTACGGTGGTACACCTGGCAC 32495
|| ||||||| | || ||||||||||| |||||| | ||||| || || |||||
Sbjct 3703 CATCACCAACAAGATCTACGAAGAAGCTGGCGTTGTGATCTACGGCGGCCTGCCGGGCAC 3644
Query 32496 GCTTGGTAAGCCTGTGCTTGTTACTGACCAATGC-CCAGCAACTAAGATTTTCGGTCTTG 32554
| || |||||||| || || || || || || || || | ||| ||||| ||
Sbjct 3643 TTTGGGCAAGCCTGTACTGGTGACCGA-CACCGCGCCGGCGGATGTGATCTTCGGCCTGC 3585
Query 32555 TAGCTGGCGCGGTAATGGTTACTGAGTCTCAAGCGCCTGGTATGCGCTCTTACCAAATCG 32614
| | ||| |||| | || ||||| || ||||| || | || || ||| || |
Sbjct 3584 TGCCAAACGCCGTAA-CATCACCGAGTCGCAGGCGCCGGGCTTCCGTTCCTACGAAGTGA 3526
Query 32615 ACGACCAAGAAAACTTGGCTATCGGTTTCCGCGCTGAGGGCACAGCTAACGTTGAAGTAC 32674
||||| |||||||| || ||||| | |||||| || ||||| | || | || || |
Sbjct 3525 ACGACGAAGAAAACCTGAGCATCGGCTACCGCGCGGAAGGCACCGTGAATATCGATGTGC 3466
Query 32675 TTGGCTACAAATGGAAAGACA 32695
| || |||| ||||||| ||
Sbjct 3465 TGGGTTACAGCTGGAAAGCCA 3445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 114939187596452
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