Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021777.1 Length=43447 Score E Sequences producing significant alignments: (Bits) Value seq2991302 86.0 2e-12 seq274481 86.0 2e-12 >seq2991302 Length=613 Score = 86.0 bits (94), Expect = 2e-12 Identities = 236/351 (67%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 732 GGCTACTTCGGGCCGACCTATCCCGCC-ATCCGCGACATCTTCTACCCGACATTCGAGGA 790 |||||||||| ||||| || ||||| ||||| ||||||||||| ||||| | || || Sbjct 447 GGCTACTTCGCACCGACTTA-CCCGCAGATCCGGGACATCTTCTATCCGACCATGGATGA 389 Query 791 AGCGGCTAACCTCCTCGGCCTCGATGTGCTGGTTAAATCTGGCGA-CAAAGAGGTCGTGG 849 | ||| || | || ||| | | | | | || | ||||| | | ||||| Sbjct 388 GGTGGCCTACGACTGGGGGCTCAA-GACCAAGATCAACCAGGCGAACCACGAGGTTCACA 330 Query 850 T-TACTCGCGGTAAGACGGTGCTAGGAACTGTTATCTGCCGCTCGATGGATAACCCTGGT 908 | ||| ||||| | | | || ||||| || ||||| |||||||| || || Sbjct 329 TCTACA-GCGGTCGGCAGTACCGCGGCACTGTGATTTGCCGGTCGATGGAGAAACCGCAG 271 Query 909 TCGATTGTGGGTTTCAAAATCGC-CGCAGCGTGCGTGGATGAGCTCGATGTATTGAGTCG 967 ||||||| |||||||| || | | | | || ||||||||||| || ||| ||| | Sbjct 270 ACGATTGTCGGTTTCAAGATTGGTCACGCCCTG-GTGGATGAGCTTGACGTACTGACTGC 212 Query 968 TGAGAAAGCTGAGCTGGCGTGGAACAAAATCGTAGCCCGTATGCGTCTGGTTATTCCGGG 1027 || ||| ||| ||| ||| ||| ||| | ||||||||||| ||||||| Sbjct 211 CATCAAGGCTCAGCAGGCCTGGCGCAAGATCATTGCCCGTATGCGCTACAACCTTCCGGG 152 Query 1028 GGTAACCAACCACATCTCTGTAACCACGACGCCGGAAGGGTTCAAGTTCGT 1078 | | | ||| | | || ||||||||||||||||| || ||||| || Sbjct 151 GCTGAAGAACGGCGTGGACGTCACCACGACGCCGGAAGGCTTTAAGTTTGT 101 >seq274481 Length=3169 Score = 86.0 bits (94), Expect = 2e-12 Identities = 137/193 (71%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 1154 CCTGCCGCCGGATTACAT-CAGCTCGCTGACCGAGACCTACCCGGCACAGTTGATTAACG 1212 |||||||||||| ||||| ||| ||||||| ||| | |||||| | ||| |||| | Sbjct 1513 CCTGCCGCCGGACTACATACAG-TCGCTGATGGAGTCTTACCCGCCGCAGCTGATCCTGG 1455 Query 1213 CGTATCTGAACGGCGAGTTCGTTAACCTGACATCCGGCAGCGTGTATTACGCATACGACC 1272 | || || ||||| ||||||| ||||||||||| ||| | || || | ||||||| Sbjct 1454 CCTACCTCAACGGTCAGTTCGTCAACCTGACATCGGGCTCGATCTACCACTCGTACGACC 1395 Query 1273 GCCGTAAGCAC---CGCAGCAAAGAGACAATTCAACCGGGTGACACGCTGTACATCGGGC 1329 || |||||| | || || || | || || || || | |||| |||||| Sbjct 1394 GC---AAGCACAATCAGTGCTTCGACACTGTGCAGCCTGGCGAACCCCTGTTTATCGGGA 1338 Query 1330 AGGACTTCAACGT 1342 |||||||||||| Sbjct 1337 TGGACTTCAACGT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133814171388038