Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021777.1
Length=43447
Score E
Sequences producing significant alignments: (Bits) Value
seq2991302 86.0 2e-12
seq274481 86.0 2e-12
>seq2991302
Length=613
Score = 86.0 bits (94), Expect = 2e-12
Identities = 236/351 (67%), Gaps = 8/351 (2%)
Strand=Plus/Minus
Query 732 GGCTACTTCGGGCCGACCTATCCCGCC-ATCCGCGACATCTTCTACCCGACATTCGAGGA 790
|||||||||| ||||| || ||||| ||||| ||||||||||| ||||| | || ||
Sbjct 447 GGCTACTTCGCACCGACTTA-CCCGCAGATCCGGGACATCTTCTATCCGACCATGGATGA 389
Query 791 AGCGGCTAACCTCCTCGGCCTCGATGTGCTGGTTAAATCTGGCGA-CAAAGAGGTCGTGG 849
| ||| || | || ||| | | | | | || | ||||| | | |||||
Sbjct 388 GGTGGCCTACGACTGGGGGCTCAA-GACCAAGATCAACCAGGCGAACCACGAGGTTCACA 330
Query 850 T-TACTCGCGGTAAGACGGTGCTAGGAACTGTTATCTGCCGCTCGATGGATAACCCTGGT 908
| ||| ||||| | | | || ||||| || ||||| |||||||| || ||
Sbjct 329 TCTACA-GCGGTCGGCAGTACCGCGGCACTGTGATTTGCCGGTCGATGGAGAAACCGCAG 271
Query 909 TCGATTGTGGGTTTCAAAATCGC-CGCAGCGTGCGTGGATGAGCTCGATGTATTGAGTCG 967
||||||| |||||||| || | | | | || ||||||||||| || ||| ||| |
Sbjct 270 ACGATTGTCGGTTTCAAGATTGGTCACGCCCTG-GTGGATGAGCTTGACGTACTGACTGC 212
Query 968 TGAGAAAGCTGAGCTGGCGTGGAACAAAATCGTAGCCCGTATGCGTCTGGTTATTCCGGG 1027
|| ||| ||| ||| ||| ||| ||| | ||||||||||| |||||||
Sbjct 211 CATCAAGGCTCAGCAGGCCTGGCGCAAGATCATTGCCCGTATGCGCTACAACCTTCCGGG 152
Query 1028 GGTAACCAACCACATCTCTGTAACCACGACGCCGGAAGGGTTCAAGTTCGT 1078
| | | ||| | | || ||||||||||||||||| || ||||| ||
Sbjct 151 GCTGAAGAACGGCGTGGACGTCACCACGACGCCGGAAGGCTTTAAGTTTGT 101
>seq274481
Length=3169
Score = 86.0 bits (94), Expect = 2e-12
Identities = 137/193 (71%), Gaps = 8/193 (4%)
Strand=Plus/Minus
Query 1154 CCTGCCGCCGGATTACAT-CAGCTCGCTGACCGAGACCTACCCGGCACAGTTGATTAACG 1212
|||||||||||| ||||| ||| ||||||| ||| | |||||| | ||| |||| |
Sbjct 1513 CCTGCCGCCGGACTACATACAG-TCGCTGATGGAGTCTTACCCGCCGCAGCTGATCCTGG 1455
Query 1213 CGTATCTGAACGGCGAGTTCGTTAACCTGACATCCGGCAGCGTGTATTACGCATACGACC 1272
| || || ||||| ||||||| ||||||||||| ||| | || || | |||||||
Sbjct 1454 CCTACCTCAACGGTCAGTTCGTCAACCTGACATCGGGCTCGATCTACCACTCGTACGACC 1395
Query 1273 GCCGTAAGCAC---CGCAGCAAAGAGACAATTCAACCGGGTGACACGCTGTACATCGGGC 1329
|| |||||| | || || || | || || || || | |||| ||||||
Sbjct 1394 GC---AAGCACAATCAGTGCTTCGACACTGTGCAGCCTGGCGAACCCCTGTTTATCGGGA 1338
Query 1330 AGGACTTCAACGT 1342
||||||||||||
Sbjct 1337 TGGACTTCAACGT 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133814171388038
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |