Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq3088379 536 3e-148 >seq3088379 Length=10556 Score = 536 bits (594), Expect = 3e-148 Identities = 1026/1487 (69%), Gaps = 55/1487 (4%) Strand=Plus/Plus Query 809 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 868 || ||||| | || ||||||||||| |||||||||||||| || || |||||||| Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 869 GAGCCGTGGCAGCTCTTTGTGATCTGCTGCG-CGTTTGGCTGGGTCAATAA--AGGCTCC 925 ||||| |||||||| |||| | || | | | || |||||||| || || ||| | Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720 Query 926 CGGCTGCGCCGCTTCCGTGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 985 ||| ||||| |||||||| || ||| | ||| | || ||||||||||||| Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780 Query 986 ATCTCTGCCGGTGTCGCCCTGTAT-----TGTT--TTGCCTGTGATAACGAGTTTGGCGC 1038 | |||||||| || | || |||| | ||| ||| |||||| ||||| Sbjct 781 GT---TGCCGGTGGCGTTG-GCATCAGCATGTTCGTCGCC---GATGGCGAGTTCGGCGC 833 Query 1039 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCTCG 1098 || ||||| | || || || || ||||||||||| ||||| || || || || || Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893 Query 1099 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1157 |||||| || | | | ||| ||||||| | || ||| || ||||| ||||||| Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952 Query 1158 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 1217 | || |||||| ||| || | || || || || |||||||||||||| || | Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012 Query 1218 ATGGTTCATCACCCCACTGTGCGGTGGTGGATGAATATCACGAGCATGCCACCGATGCGC 1277 | || |||| || ||| || | || || || || ||||| || | || || | Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072 Query 1278 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1337 || ||| ||||| || |||||||| || || |||||||||||||||| ||||| Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132 Query 1338 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGA 1397 |||||||||| | ||||||| || |||||||||||||| || || | ||| |||||| Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192 Query 1398 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1457 ||||| ||| | ||||| | || || | ||||| |||| || |||| || | Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252 Query 1458 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1517 | |||||||||||||| ||| || |||||| || ||||| || || ||||| |||| Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312 Query 1518 TTTATCGCGAATTTTTGTTAATTCAGCAGCAGCGTGCGAAAAATAACGCCGGTCTGGCAA 1577 | | || || | | | ||||||| | || | || || | || | Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372 Query 1578 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTGT-CGGCGCGTTCGGCGTATTTCAAC 1636 || || ||||| || |||||||| |||||||| || | || |||| | || |||| Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGCTT-TTACAAC 1431 Query 1637 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAG 1696 ||| |||||| | |||||| || | || ||||| || ||||||||||||||||| Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491 Query 1697 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1756 ||| || | ||| ||| ||||||| ||||| ||||||||| || || || | | Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAACT-CAAGG-GCCAGGT 1549 Query 1757 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 1814 | | | ||| | |||||||| || | || |||||||| | || ||| ||||||| Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609 Query 1815 TACCGTATGACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 1874 | || |||||||| | | | | ||| || || || | || || || | Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAAG---------CGCATGGCTGAGCGTT 1660 Query 1875 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACCGTTACCGATGGTGCAGAGGTGGAT 1930 | ||| ||| | | || || | ||| || ||||| ||||| ||||| || Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGAC 1716 Query 1931 TATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1988 || ||| | ||||| || || |||| | ||||||| | || | ||| || | || | Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774 Query 1989 CACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGA 2048 || || |||||| || || || || ||| |||||||||| ||| | | | | Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834 Query 2049 ATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGG 2108 |||| || || ||| ||||||| | |||| ||||| || ||||||||||||||||||| Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894 Query 2109 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2168 | ||||| || | || || || |||||||||||||| || |||||||||||||| ||| Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954 Query 2169 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAAGAG 2227 |||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| ||||| || Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013 Query 2228 CAGGCG--GAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCG 2272 |||| || ||||| ||||| || || || |||||||||||| || Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127735212048334