Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 536 3e-148
>seq3088379
Length=10556
Score = 536 bits (594), Expect = 3e-148
Identities = 1026/1487 (69%), Gaps = 55/1487 (4%)
Strand=Plus/Plus
Query 809 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 868
|| ||||| | || ||||||||||| |||||||||||||| || || ||||||||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 869 GAGCCGTGGCAGCTCTTTGTGATCTGCTGCG-CGTTTGGCTGGGTCAATAA--AGGCTCC 925
||||| |||||||| |||| | || | | | || |||||||| || || ||| |
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720
Query 926 CGGCTGCGCCGCTTCCGTGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 985
||| ||||| |||||||| || ||| | ||| | || |||||||||||||
Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780
Query 986 ATCTCTGCCGGTGTCGCCCTGTAT-----TGTT--TTGCCTGTGATAACGAGTTTGGCGC 1038
| |||||||| || | || |||| | ||| ||| |||||| |||||
Sbjct 781 GT---TGCCGGTGGCGTTG-GCATCAGCATGTTCGTCGCC---GATGGCGAGTTCGGCGC 833
Query 1039 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCTCG 1098
|| ||||| | || || || || ||||||||||| ||||| || || || || ||
Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893
Query 1099 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1157
|||||| || | | | ||| ||||||| | || ||| || ||||| |||||||
Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952
Query 1158 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 1217
| || |||||| ||| || | || || || || |||||||||||||| || |
Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012
Query 1218 ATGGTTCATCACCCCACTGTGCGGTGGTGGATGAATATCACGAGCATGCCACCGATGCGC 1277
| || |||| || ||| || | || || || || ||||| || | || || |
Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072
Query 1278 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1337
|| ||| ||||| || |||||||| || || |||||||||||||||| |||||
Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132
Query 1338 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGA 1397
|||||||||| | ||||||| || |||||||||||||| || || | ||| ||||||
Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192
Query 1398 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1457
||||| ||| | ||||| | || || | ||||| |||| || |||| || |
Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252
Query 1458 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1517
| |||||||||||||| ||| || |||||| || ||||| || || ||||| ||||
Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312
Query 1518 TTTATCGCGAATTTTTGTTAATTCAGCAGCAGCGTGCGAAAAATAACGCCGGTCTGGCAA 1577
| | || || | | | ||||||| | || | || || | || |
Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372
Query 1578 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTGT-CGGCGCGTTCGGCGTATTTCAAC 1636
|| || ||||| || |||||||| |||||||| || | || |||| | || ||||
Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGCTT-TTACAAC 1431
Query 1637 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAG 1696
||| |||||| | |||||| || | || ||||| || |||||||||||||||||
Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491
Query 1697 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1756
||| || | ||| ||| ||||||| ||||| ||||||||| || || || | |
Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAACT-CAAGG-GCCAGGT 1549
Query 1757 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 1814
| | | ||| | |||||||| || | || |||||||| | || ||| |||||||
Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609
Query 1815 TACCGTATGACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 1874
| || |||||||| | | | | ||| || || || | || || || |
Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAAG---------CGCATGGCTGAGCGTT 1660
Query 1875 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACCGTTACCGATGGTGCAGAGGTGGAT 1930
| ||| ||| | | || || | ||| || ||||| ||||| ||||| ||
Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGAC 1716
Query 1931 TATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1988
|| ||| | ||||| || || |||| | ||||||| | || | ||| || | || |
Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774
Query 1989 CACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGA 2048
|| || |||||| || || || || ||| |||||||||| ||| | | | |
Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834
Query 2049 ATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGG 2108
|||| || || ||| ||||||| | |||| ||||| || |||||||||||||||||||
Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894
Query 2109 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2168
| ||||| || | || || || |||||||||||||| || |||||||||||||| |||
Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954
Query 2169 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAAGAG 2227
|||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| ||||| ||
Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013
Query 2228 CAGGCG--GAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCG 2272
|||| || ||||| ||||| || || || |||||||||||| ||
Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127735212048334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |